Ubuntu Multimedia :: Cannot Find A Simple Video Cutter That Works All The Time

I been struggling with this since Karmic and I know others have as well. This is really the only thing making me keep a Windows install around for my personal stuff.

Problem: Convert .TS files to iPod or really any smaller format keeping A/V sync after edit. I can covert my .TS file perfectly if I do not edit it but I want to just do a simple, quick trim of 2 mins from beginning and end.

HandBrake with convert the file perfectly but cannot trim. Avidemux does a great job on the video but I always have to play with the audio shift to get it in sync. It is usually betwenn -250ms to -1000ms off but I cannot count on it. If I run the video through DGIndex in Wine or view it with Mediainfo both programs detect the an offset problem but they are always wrong by almost 500ms and it is never constant.

Regular video editing I have pretty good luck with my normal DV files and I could even run the .TS files through other programs but it is too time consuming to be useful form this simple task. Anytime I want to take my recorded TV .TS files I cannot edit them quickly without making a full project out of it in Openshot Cinelerra, etc.

Has anyone found a quick, reliable way to do some lite video trimming in Ubuntu and keep A/V sync without having to resort to any Windows programs?

EDIT: Also I really do not want to resort to have to demux separately either. I know I am asking a lot but I got spoiled with a couple of Windows programs that will edit without reencode programs like VideoReDo can do the editing and converting all at once (for $100 !).