Programming :: Shell Scripting For Accepting Input From Different Directories Automatically

Nov 6, 2010

The two shell scripts (t1prog and t2prog) are given below they are working fine. The input for the first program is 't1.det' and for second program is 't1.rnaml'. These two input files are in 'dir1' folder. I am executing the shell like 'sh t1prog > t1out' and 'sh t2prog > t2out' from this directory only. Then I am executing a java program 'java RNA'; for this, t1out and t2out are input files used in the program and I am getting the final output on screen.

The input files 't1.det' and 't1.rnaml' are in different folders with same name and with different values. Each folder specifies one gene sequence input files.

In mfold directory there are 5 directors and each directory contains these input files as shown below
cd mfold
dir1 dir2 dir3 dir4 dir5
cd dir1
t1.det t1.rnaml

[Code].....

for inputs in different directories and executing these and redirecting the final ouput after executing 'java RNA' statement to a file is needed.

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