Ubuntu :: Download Bioconductor 2.5 Using A R Command
Feb 14, 2010
I am running Ubuntu 9.10, I used Synaptic to download R version 2.9.2. I am trying to download Bioconductor 2.5 using a R command using these instructions [URL]. When I enter biocLite(), I get "argument 'lib' is missing: using '/home/pedro/R/i486-pc-linux-gnu-library/2.9" an error I never encountered in past ubuntu versions. After the packages finish installing, it says they are in a temp file /tmp/RtmprtEjox/downloaded_packages and that there were a couple of Warning messages:
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : installation of package 'RCurl' had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : installation of package 'biomaRt' had non-zero exit status
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Apr 26, 2010
how to download the dep package with apt command?
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Oct 2, 2009
i want to run init 0 as root after my torrent download completes. i use ktorrent as a downloader and Ubuntu as my OS.how should i make the command run automatically as soon as my download completes.
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Feb 11, 2011
I was making a download option in a script but I cant seem to get the command right
Code:
tar cjf /tmp/file.tar.bz2 --exclude="config" ./
My archive ends up with a file-1.tar in it.
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Jun 18, 2010
I tried to run % mvdir earlier and it said command not found. I then ran a search for it and still not found.Is there a place I can download the script for the command, and is there any information I should know post-download to get it to work?
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Jan 22, 2010
I would like to code a program that can play the shoutcast, eventally with lirc and sure without any X (command line). Is there a way to retrieve all those streams from their shoutcast website? I noted that the daily headlines availabe in each country arent there.
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Aug 29, 2010
For example, see this page Advanced Linux Programming.
I want to download all the pdf files linked from this page. Is there a simple commandline way of doing it?
Something on the lines of
download [URL]
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Apr 8, 2011
Let's say i have a link to a file http://www.domain.com/dir/myfile.ext
Is there a command line tool that will allow me to download this file. I'm looking for something like: download <http address> ... is there anything that simple?
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Feb 14, 2011
How to download debian stable setup iso from the command line?
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May 18, 2009
I want to download a file from the Linux command line. Basically I'm using ssh and I'm trying to download a file to my file system on my laptop. How can I do that from the command line?
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Jun 15, 2011
Looks like the following command does it:
Code:
wget http://www2.ati.com/drivers/linux/$(curl -s http://support.amd.com/us/gpudownload/linux/Pages/radeon_linux.aspx | sed -n 's/^.*(ati-driver-installer[^"]*)">.*/1/p')
I'll add it in atiupgrade soon, so it will try this before the version hardcoded in the script.
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Feb 3, 2010
I'm not sure how to explain my situation. I would like to download the file <https://www.vmware.com/tryvmware/p/activate.php?p=free-esxi&lp=1&ext=1&a=DOWNLOAD_FILE&baseurl=http://download2.vmware.com/software/vi/&filename=VMware-VMvisor-Installer-4.0.0.Update01-208167.x86_64.iso> via the command line. I've tried a few different methods with wget, the best I get is an index.php file. I'm not at all familiar with php but a search for "wget php" yielded nothing helpful.
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Dec 4, 2009
Been searching endlessly for a command line tool/utility that downloads all the components of a webpage, given a URL. As in,
[URL]
should fetch the base html and all the required components necessary for rendering the page, which includes all the images, css, js, advertisements etc. Essentially it should emulate the browser. The reason I'm looking for such a tool is to measure the response time of a website for a given URL from the command line. I know of several GUI tools like HTTPFox, Ethereal/Wireshark that serve the same purpose. But none in CLI.
There are wget and curl. But from what I understand they can just fetch the contents of the given URL and don't parse the html to download all other components. wget does do recursive download. But the problem is, it goes ahead and fetches all those <a href> pages too, which I don't want. Given a URL, the browser gets the html first, parses it, and then downloads each component (css, js, images) that it needs to render the page. Is there a command line tool/script that can accomplish the same task?
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Jun 19, 2010
A few days ago I installed a fresh ubuntu 10.04 LTS without the X-Server (only cli) and I'm looking for a good Download Manager for rapidshare and megaupload free account that work with WebUI. I tried a some software :
- FatRat (doesnt work without X-Server)
- Slimrat (doest have actualy a web ui)
- Plowshare (no WebUI)
It seems to be very hard to find
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Aug 9, 2011
I need to download a file from a website which has a URL formatted like:
[URL]
This redirects to a .zip file which has to be saved. There is also a need to authenticate based on username and password.
I tried to use wget, curl and lynx with no luck.
UPDATE:
wget doesnt work with redirection. It simply downloads the webpage instead of the zip file. curl gives the error "Maximum redirection exceeded > 50 " lynx also gives the same error.
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Apr 1, 2011
How do I install Drivers for logitech c100 webcam in kiwi 10.08?
I am dyslexic. Is there a command for install webcam drivers that I can copy and paste to terminal window?
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Jul 6, 2011
What is the Wget command to perform the following:
download only html from the url and save it in a directory
other file extentions like.doc,.xls etc should be excluded automatically
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Nov 19, 2009
I compiled the 2.6.31.6 kernel and <insert drumroll> it boots!(my first kernel roll, I'm kind of shocked actually) That's the good news. The bad news is that my NVIDIA drivers are gone in the wind. That's not entirely true as I can still boot into the old kernel and startx. Is there a way to download the driver using the command line for reinstall?
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Jan 4, 2011
anybody knows nice tool to check connection speed UPLOAD / DOWNLOAD on the server ?Maybe existing something like speedtest.net for servers ?
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Nov 10, 2010
I have downloaded a few tar.gz programs and trying to follow the instructions always come to the command "make". The result is a printout stating there is no make command. The last program had a "makeinstall" but that wasn't recognised either. I am no a new comer. I have been using Ubuntu for nearly four years and I have only succeeded in installing two programs and that was at least two and a half years ago. Since then I've had no luck whatsoever. Is there anyone out there that can tell me, in simple English, leaving out no steps, how in the h*** I can download and install a tar.gz program?
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Jan 8, 2011
I am at a university where my bandwidth is severely capped. I can start several other computers near me and download at the limited speed simultaneously. Is there any way for me to share the download between the computers to get the cumulative speed?
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Apr 28, 2011
I just installed 11.04, and the software center is almost unusable. I'm currently clocking about 32kb/s on my modern laptop. Does anyone know how to fix this? PS- During install, it took 20 minutes to download the language packs, and it said I would be there close to forever for the update downloads.
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Jan 21, 2011
I want to download open suse but it takes up to an hour to download the 600mb .iso, my internet speed aren't that slow though. Im downloading the Live KDE, Direct Link 32-bit, all the other types of download have strange torrent or metalink fileformat. Is this just me
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Mar 17, 2011
Alternative to Internet Download Manager (IDM) to download movies from any website.Ok, so one of the cool things about IDM was that i was able to download movies from ..... and other sites that have video clips on their site, but now that i have switch all my computers over to ubuntu linux, i now need an alternative to this problem because IDM will not work with the firefox on ubuntu linux.So my question is, do you guys know of an alternative software for downloading movies from any site such as ..... and other sites?
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Aug 2, 2010
Here at home I have several Ubuntu installations, mine, the kids computers and a couple of laptops. What I'm looking for is a solution or a pointer in the right direction to setup on our local Ubuntu server a sort of cache. Each day each Ubuntu on the network, checks for updates and downloads, and installs. What I'm looking for is a way for one machine to download the update and then the others to download from the local resource.
A sort of local cache to try and minimise everyone downloading straight from the net for pretty much the same updates. I did a emerge cache many years ago when I was using Gentoo, so I'm wondering what I can use/do here with Ubuntu as we are all loving this distro now.
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Dec 21, 2010
can we use recursive download of wget to download all the wallpapers on a web page?
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Jun 5, 2010
This is our first time choosing and installing linux. Our other servers are all windows 2008 x64. We were told to install fedora 13. I can only find a download for the desktop version and we're looking for the SERVER x64 download. Could I please get a link?
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May 31, 2010
How to repartition a hard drive using Mepis 3.3, none of the listed sites will open to me. Is this the best software to repartition a new Windows 7 hard drive? I notice there are later versions of the Mepis software.
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Jan 25, 2010
I have been using ubuntu for a good time and now i want to install opensuse.I have dwnlded the new (11.2) version 2 times but on installing it says unable to create repository. it takes a full day to dwnld here.. please suggest how to use the existing dwnld or a way toget a correct dwnld. i think the earlier one is corrupt.
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Mar 9, 2011
I haved tried 3 times to download DVD-7 from http://cdimage.debian.org/debian-cd/...md64/jigdo-dvd, and every time it has failed with just 5 files left to download.
It says:
I cannot begin to describe. All those hours of downloading for nothing! What the heck is happening here? When I try to just continue on, I get error code 3 aborts and have to just start all over.
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