I am running BWA (burrow-wheeler alignment) and, keep getting an error that there isn't enough memory allocated. How do I change the memory allocation? I'm working on a good quality desktop only a little over a year old, so having the memory shouldn't be the problem.
View 9 RepliesI went to an interview last week and there was this guy who asked a simple question that i have been trying to solve for a couple of days. I tried google but i just cant get the search keywords right. The result were just useless. Well, the question is : "How can we allocate a limited memory to a process before we start its execution" well, the question is related to an X11 system so may be some flags must be set to limit its memory.
View 9 Replies View RelatedI have a vector that I do not want to call new on during operation so I use the Capacity Feature to allocate all memory at beginning of program
Code:
struct chartype
{
public:
unsigned char value[MAXCHARTYPE_SIZE];
};
[Code].....
I get this error when I run "sudo apt-get install python-software-properties"
Preconfiguring packages ...
dpkg: unrecoverable fatal error, aborting:
fork failed: Cannot allocate memory
E: Sub-process /usr/bin/dpkg returned an error code (2)
I'm trying to install deluge via ssh and my vps has 512mb ram and is only using 11% of it prior to running the code.
i just recently installed ubuntu 10.04 onto my laptop. its running as a dual boot. i only allocated about 10gb of memory and have already run out. is it possible to allocate more memory afterwards
and another bug that i am having is my shift key is not functioning properly. if anyone happens to know this issue too. so i can't do exclamations of periods, capitalizations, etc... how would you remap your keyboard
I have mounter ubuntu karmic 9.10 on a XP sp3 using vmware,i wanted to move some files through share.everything went well for 2 hours then i keep getting Cannot allocate memory.
View 2 Replies View RelatedI'm running a quite complex model, and it's taking me around a week to complete the run, and one of my colleagues says that he can run it in one-two days. After looking to several forums to know how does it work, I've seen how the memory is used (using the command ps -A --sort -rss -o comm,pme), and the model run just takes 0,3% of the memory. I bought a 4 cores and 8gb of RAM laptop to be able to run the model fast, but I don't know how to allocate the use of the memory to concentrate it in developing that task. Is that possible?
View 2 Replies View Relatedwhen I try to execute busybox on Redhat Linux 4 I am getting the following error. Any idea why ?
View 1 Replies View RelatedOn SunOS 10 get an error when starting a large Java process with over 2Gb memory.
View 4 Replies View RelatedCan anyone tell me is there a way to add more than 2GB memory application in a 32 bit server? I found on many threads that it is not possible to set memory limit of a particular application to more than 2GB. I am using Fedora release 8 and trying to add more than 2GB memory to tomcat. If I modify the variable CATALINA_OPTS in /opt/bobcat/bin/catalina.sh (Startup script of tomcat) and add a value greater than 2GB for memory, tomcat wont start.Is there any work around / Kernel Patches available? Suggestions??
View 10 Replies View RelatedThis is a clean install of Debian Lenny, using KDE3.5.10 desktopHave followed these instructions:http://wiki.debian.org/ATIProprietary
Using kernel 2.6.26-2-686, I think the fglrx module has been built correctly.
orac:~# modinfo fglrx
filename: /lib/modules/2.6.26-2-686/nonfree/fglrx/fglrx.ko
[code]....
I just switched over to openSUSE about a week ago from Ubuntu and I just purchased an Asus N13 PCI-E wireless network adapter which uses an RALink 2860 chipset. I plugged it in and openSUSE was able to detect it and everything but when I went to go configure it using YaST, it wouldn't be able to scan for networks.
So, I reinstalled my old adapter, downloaded the latest source from RALink and compiled the drivers. When I tried to use insmod on the new .ko that was compiled, I got the "Could not allocate memory" error.
If you need dmsg logs or anything else, I can reinstall the card and get those.
I am developing a code where I need to store the planes of an object in a tree & also i need to store it in a list for further processing ... when I try to allocate using malloc the memory allocation when i checked this in internet , I came to know that it may because the memory that I am trying to allocate may be more than the size_t variable.
View 9 Replies View RelatedOn my windows console, i have installed sun virtualbox. I only have 768MB ram and so i downloaded a trial version of eboostr. I thought it would work, but when i tried an install of 11.2, also, i tried a debian install, it did the same thing, it froze up in the middle of the install with the error Code: unable to allocate and lock memory. I guess that eboostr doesn't work, but is there a way to use a flash drive as ram in virtual box?
View 5 Replies View RelatedWhile Apache is off, then everything is OK, but if I start apache server after some time I get messages "Unable to fork: Cannot allocate memory" when trying to do some commands with ssh(dir,rm,top and so on).
P.S. There is free RAM when I get that message.
After updating to openSUSE 11.3, and restarting my computer, I placed my computer in sleep(suspend to RAM) mode, and I lost my internet connectivity. I noticed that my computer was only connected through ethernet. After entering "dhclient eth0" in a terminal, I received the following output.
Code:
RTNETLINK answers: Cannot allocate memory
This is the first time that I have had issues with connecting to the Internet using Ethernet.
My mail server stopped working this weekend, when I got in today I restarted and all the emails came through. The panic_log shows: daemon: accept process fork failed: Cannot allocate memory several times over the course of a few minutes. Can anyone give me advice on troubleshooting this one?
View 1 Replies View RelatedI am writing a function(in C language in Linux) to initialize an array of a structure from a mysql table by calling a function by reference but I have a problem with call this function by reference . this is my program:PHP Code:
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
[code]...
I have written a program which uses port 5000. I need to restrict other programs use this port when I'm not running that program. In Linux are there a mechanism to restrict port 5000 accesses from other programs.
View 2 Replies View RelatedI recently had to move to a new machine, everything went well except for one thing. I did fresh installation of LAMP server all with default configs. Every time I'm using PHP script to that invokes include, require or require_once I get the following error:
Code: Fatal error: Allowed memory size of 20971520 bytes exhausted (tried to allocate 7680 bytes) in /var/www/index.php on line 2 index.php file: PHP Code:
<?php include "index.php";?>
icukapi.php file:
PHP Code:
<?php echo "test";?>
My memory_limit in php.ini is set to 20M. I tried to increase that however it didn't quite work. PHP seems to allocate all possible space and return that message every time i try. If somebody has an idea of how to fix it I would be more than grateful. I spend quite a long time searching for an answer however the all things i found suggested increating memory_limit which in this case doesn't work.
-bash-3.2# tar -xzvf lzo-2.03.tar.gz
gzip: stdout: Cannot allocate memory
lzo-2.03/
lzo-2.03/src/
[code]....
This is on a VPS with 256mb memory. vmstat and /prov/meminfo both show that over 200mb is free.
I get errors trying to virtual IPv6 Addresses i a lab environment. It works fine up to 2033 (?) adrressses, but when I try to add more i get "Cannot allocate memory" error:
# ifconfig eth0 add 2001:1b70:8282:2021:18:0:20:1
SIOCSIFADDR: Cannot allocate memory
This is on Ubuntu Server 9.10 (64-bit).
I am hosted on a VPS (OpenVZ) with:
Memory: 3gb
Burst: 3gb
OS: Cent OS 5 32 bit
Java Version:
Quote:
java version "1.6.0_17"
OpenJDK Runtime Environment (IcedTea6 1.7.10) (rhel-1.20.b17.el5-i386)
OpenJDK Server VM (build 14.0-b16, mixed mode)
I am receiving an error when I start bukkit (a minecraft server software). I have properly installed java. And I am in the correct directories.
Code:
java -Xms512m -Xmx2600m -jar craftbukkit.jar nogui
After doing that command I get the following:
Quote:
[root@server1 Minecraft]# java -Xms2600m -Xmx2600m -jar craftbukkit.jar nogui
[Lnet.minecraft.server.Statistic;@1319c
146 recipes
[Lnet.minecraft.server.Statistic;@1319c
16 achievements
[Code].....
Do notice the line in the above quote ""sh": java.io.IOException: error=12, Cannot allocate memory."
The server will generate a world, but you can not connect to it using the MC client. Does anyone know what the problem is? I have googled for this problem for literally the past 4 hours and I am getting no where.
Is there a way I can start a program and then record a log of how much memory it's using at a specific interval until the program ends?
I've tried writing a shell script but get the error: ./apps/mem-test.sh: line 4: [: too many arguments
Here's the non-working script:
Code:
$HOME/apps/ImageMagick/bin/convert -limit memory 64 -limit map 128 $HOME/SSI/davidkennardphotography/Img-Orig/95-Pole-Bank.jpg -set option:filter:filter Lanczos -set option:filter:blur 0.8 -resize 1024x720 $HOME/resizedImage.jpg &
GOODY="ps -p $! -o pid,%cpu,rss,cmd | grep convert >>test.txt"
[Code]....
I am using ubuntu 10.10 with gnome desktop on a desktop computer (pentium 4 cpu with 1 Gb memory), and when I use OpenOffice Impress, convert opens up and uses most of my cpu power. Even worse, after closing OpenOffice and all instances of nautilus, convert stays in memory and keeps using most of my cpu power (between 30 and 75 %, acccording to system monitor.Is it normal ? How could I set up my computer to limit convert cpu usage, and to unload from memory after being used.
View 3 Replies View RelatedI am trying to run a simple perl program that requires getting stock price data from yahoo for just 1 ticker symbol, and it was running fine till this morning, wherein it froze and displayed the message: Out of memory!
I cleared my cache by running the following:
Code:
$sync
$sudo echo 1 |sudo tee /proc/sys/vm/drop_caches
$sudo echo 2 |sudo tee /proc/sys/vm/drop_caches
$sudo echo 3 |sudo tee /proc/sys/vm/drop_caches
but it hasn't helped.
Even Firefox has been freezing, so I basically cannot do anything on my computer.
Kindly let me know the Linux tool to find out the memory corruption in a program. The tool could be built for PPC as well.
View 6 Replies View RelatedI'm running a java program and to debug the program instead of using a debugger I would like to look to the heap and to the bytes in the memory of the process. I was hoping that the pointers would give me a snapshot of a moment of the application. It exists a program that allow us to look to the details of a process and to the memory ram?
View 2 Replies View RelatedI wrote a program in lcc in windows and I have to write it in gcc in unix. In lcc there was an option to use more memory than the default for the stack. The following code is working in lcc but in gcc it gives segmentation fault:
#include <stdio.h>
#include <math.h>
#include <stdlib.h>
#include <time.h>
int main()
{
I would like to know if there is a linux command to verify the amount of memory used by a program. The programs I am using were compiled with gfortran.
View 2 Replies View Related