Server :: 100 Percent Swap Usage With Loads Of Free Memory
Dec 10, 2010
Nagios had alerted me that the server had a very high load average exceeding the critical level (17+), when logging onto the server I found that all 4GB of the swap was in use despite the fact that there was 15GB+ of free memory (and that's not even including memory from cache and buffers!) Because it seems all heavily used pages were being stored in swap, the I/O wait on the server became very high, and 4 kswapd daemons were taking up nearly 100% available CPU. This did coincide with an error reported by Bacula during a backup job while changing to a bad tape...
From /var/log/bacula.log:
Code:
10-Dec 02:11 bacula-sd JobId 1898: End of medium on Volume "4097" Bytes=434,170,000,000 Blocks=217,084 at 10-Dec-2010 02:11.
10-Dec 02:11 bacula-sd JobId 1898: 3307 Issuing autochanger "unload slot 4097, drive 0" command.
10-Dec 02:12 bacula-sd JobId 1898: 3301 Issuing autochanger "loaded? drive 0" command.
10-Dec 02:12 bacula-sd JobId 1898: 3302 Autochanger "loaded? drive 0", result: nothing loaded.
10-Dec 02:12 bacula-sd JobId 1898: 3304 Issuing autochanger "load slot 4096, drive 0" command.
10-Dec 02:13 bacula-sd JobId 1898: 3305 Autochanger "load slot 4096, drive 0", status is OK.
10-Dec 02:13 bacula-sd JobId 1898: Volume "4096" previously written, moving to end of data.
10-Dec 03:51 bacula-sd JobId 1898: Error: Unable to position to end of data on device "Tape-1" (/dev/IBMtape0n): ERR=dev.c:1384 read e
rror on "Tape-1" (/dev/IBMtape0n). ERR=Input/output error.
10-Dec 03:51 bacula-sd JobId 1898: Marking Volume "4096" in Error in Catalog.
10-Dec 03:51 bacula-sd JobId 1898: 3307 Issuing autochanger "unload slot 4096, drive 0" command.
10-Dec 03:58 bacula-sd JobId 1898: 3301 Issuing autochanger "loaded? drive 0" command.
10-Dec 03:58 bacula-sd JobId 1898: 3302 Autochanger "loaded? drive 0", result: nothing loaded.
10-Dec 03:58 bacula-sd JobId 1898: 3304 Issuing autochanger "load slot 4098, drive 0" command.
10-Dec 03:58 bacula-sd JobId 1898: 3305 Autochanger "load slot 4098, drive 0", status is OK.
10-Dec 03:59 bacula-sd JobId 1898: Wrote label to prelabeled Volume "4098" on device "Tape-1" (/dev/IBMtape0n)
10-Dec 03:59 bacula-sd JobId 1898: New volume "4098" mounted on device "Tape-1" (/dev/IBMtape0n) at 10-Dec-2010 03:59.
At the same time, these messages starting occuring in /var/log/messages:
Code:
Dec 10 03:51:47 07 kernel: Mem-info:
Dec 10 03:51:47 07 kernel: Node 0 DMA per-cpu:
Dec 10 03:51:47 07 kernel: cpu 0 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 0 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 1 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 1 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 2 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 2 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 3 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 3 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 4 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 4 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 5 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 5 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 6 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 6 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 7 hot: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: cpu 7 cold: high 0, batch 1 used:0
Dec 10 03:51:47 07 kernel: Node 0 DMA32 per-cpu:
Dec 10 03:51:47 07 kernel: cpu 0 hot: high 186, batch 31 used:162
Dec 10 03:51:47 07 kernel: cpu 0 cold: high 62, batch 15 used:48
Dec 10 03:51:47 07 kernel: cpu 1 hot: high 186, batch 31 used:0
Dec 10 03:51:47 07 kernel: cpu 1 cold: high 62, batch 15 used:0
Dec 10 03:51:47 07 kernel: cpu 2 hot: high 186, batch 31 used:0
Dec 10 03:51:47 07 kernel: cpu 2 cold: high 62, batch 15 used:0
Dec 10 03:51:47 07 kernel: cpu 3 hot: high 186, batch 31 used:18
Dec 10 03:51:47 07 kernel: cpu 3 cold: high 62, batch 15 used:0
Dec 10 03:51:47 07 kernel: cpu 4 hot: high 186, batch 31 used:159
Dec 10 03:51:47 07 kernel: cpu 4 cold: high 62, batch 15 used:56
...
Dec 10 03:51:47 07 kernel: Node 3 HighMem per-cpu: empty
Dec 10 03:51:47 07 kernel: Free pages: 732052kB (0kB HighMem)
Dec 10 03:51:47 07 kernel: Active:4232128 inactive:3071288 dirty:158210 writeback:0 unstable:0 free:183320 slab:256840 mapped-file:289545 mapped-anon:3805487 pagetables:13063
Dec 10 03:51:47 07 kernel: Node 0 DMA free:10796kB min:4kB low:4kB high:4kB active:0kB inactive:0kB present:10356kB pages_scanned:0 all_unreclaimable? yes
Dec 10 03:51:47 07 kernel: lowmem_reserve[]: 0 3512 9067 9067
Dec 10 03:51:47 07 kernel: Node 0 DMA32 free:213332kB min:2500kB low:3124kB high:3748kB active:1794108kB inactive:1463220kB present:3596296kB pages_scanned:64 all_unreclaimable? no
Dec 10 03:51:47 07 kernel: lowmem_reserve[]: 0 0 5555 5555
Dec 10 03:51:47 07 kernel: Node 0 Normal free:41028kB min:3952kB low:4940kB high:5928kB active:3409444kB inactive:1471120kB present:5688320kB pages_scanned:0 all_unreclaimable? no
Dec 10 03:51:47 07 kernel: lowmem_reserve[]: 0 0 0 0
Dec 10 03:51:47 07 kernel: Node 0 HighMem free:0kB min:128kB low:128kB high:128kB active:0kB inactive:0kB present:0kB pages_scanned:0 all_unreclaimable? no
Dec 10 03:51:47 07 kernel: lowmem_reserve[]: 0 0 0 0
Dec 10 03:51:47 07 kernel: Node 1 DMA free:0kB min:0kB low:0kB high:0kB active:0kB inactive:0kB present:0kB pages_scanned:0 all_unreclaimable? no
...
Well to cut a long story short, I fixed the problem by disabling the swap partition with 'swapoff'. After about 30 mins all the swap was freed and the server went back to normal. I don't dare reactivate the swap partition and unfortunately as this is a live server which currently has no fail over, I can't reboot either
Server Spec:
4 * Dual-Core AMD Opteron(tm) Processor 8214
32GB DDR2 ECC RAM
RHEL 5.5, 2.6.18-194.11.3.el5 SMP x86_64
Running many KVM VMs (All CentOS x64) and kksmd is used.
bacula-dir Version: 5.0.0
IBM Tape Drive using lin_tape module version 1.34.0 according to modinfo
And before anybody asks
# sysctl vm.swappiness
vm.swappiness = 10
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Aug 6, 2010
I've come across a really strange issue with one of my RHEL servers. The "free" command shows that 7019 MB of memory are actually in use by my system, but when summing up the actual usage (or even virtual usage like the example below) it doesn't add up - the sum is far less than what is reported by "free":
Code:
[root@server1 ~]# free -m
total used free shared buffers cached
Mem: 12011 7946 4065 0 4 23
-/+ buffers/cache: 7919 4092
[code]....
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Why linux uses swap space, even if there are free physical memory available.
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Just noticed from the "top" command that one of my least heavily used box is swapping excessivly by a program called setroubleshootd. Following is the top section of the "top" command sorted by Swap used for both boxes. Also tried checking it out to see if there's a "service setroubleshootd restart" but when I checked the status I got the following.
Code:
[root]# service setroubleshootd status
setroubleshootd: unrecognized service
Lightly loaded box with lots of swapping
Code:
Tasks: 85 total, 2 running, 83 sleeping, 0 stopped, 0 zombie
Cpu(s): 0.0%us, 0.0%sy, 0.0%ni, 98.0%id, 1.7%wa, 0.0%hi, 0.3%si, 0.0%st
Mem: 1026880k total, 983528k used, 43352k free, 59604k buffers
Swap: 2064376k total, 355692k used, 1708684k free, 121996k cached
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ SWAP COMMAND
3319 root 15 0 1202m 665m 5748 S 0.0 66.3 23:29.99 537m setroubleshootd
3845 root 34 19 253m 14m 2188 S 0.0 1.5 0:34.41 238m yum-updatesd
3841 gdm 16 0 216m 5300 4236 S 0.0 0.5 0:00.15 211m gdmgreeter
3822 root 18 0 190m 2208 1568 S 0.0 0.2 0:00.00 187m gdm-binary
3824 root 15 0 185m 3948 3236 S 0.0 0.4 0:00.11 181m gdm-rh-security
3725 root 16 0 163m 2532 1920 S 0.0 0.2 0:00.00 161m gdm-binary
3500 root 18 0 130m 2140 1240 S 0.0 0.2 0:00.00 128m cupsd
Heavily used box with little swapping
Code:
Tasks: 118 total, 4 running, 113 sleeping, 0 stopped, 1 zombie
Cpu(s): 4.7%us, 0.3%sy, 0.0%ni, 94.7%id, 0.0%wa, 0.0%hi, 0.3%si, 0.0%st
Mem: 2059580k total, 1928356k used, 131224k free, 162032k buffers
Swap: 4095992k total, 12k used, 4095980k free, 1336632k cached
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ SWAP COMMAND
3842 root 34 19 253m 17m 2196 S 0.0 0.9 0:34.20 235m yum-updatesd
3284 root 15 0 301m 77m 6004 S 0.0 3.9 2:23.30 223m setroubleshootd
3840 gdm 16 0 216m 16m 7064 S 0.0 0.8 0:00.43 199m gdmgreeter
3814 root 18 0 190m 2352 1644 S 0.0 0.1 0:00.00 187m gdm-binary
3816 root 15 0 185m 4112 3384 S 0.0 0.2 0:02.90 181m gdm-rh-security
3724 root 15 0 163m 2588 1976 S 0.0 0.1 0:00.00 161m gdm-binary
3465 root 18 0 141m 14m 1824 S 0.0 0.7 0:00.06 127m cupsd
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12396 daemon 15 0 112m 13m 3440 S 0.0 0.7 0:00.99 98m httpd
3556 root 18 0 103m 5260 2208 S 0.0 0.3 0:37.68 98m httpd
11778 daemon 15 0 117m 19m 3144 S 2.3 1.0 0:01.76 98m httpd
12750 daemon 15 0 106m 9096 2860 S 0.0 0.4 0:00.04 97m httpd
12673 daemon 15 0 110m 12m 2876 S 0.0 0.6 0:00.23 97m httpd
12693 daemon 15 0 110m 13m 2876 S 0.0 0.7 0:00.18 97m httpd
12666 daemon 15 0 105m 8132 2888 S 0.0 0.4 0:00.19 97m httpd
12729 daemon 15 0 112m 15m 2968 S 0.0 0.8 0:00.11 97m httpd
12588 daemon 15 0 110m 12m 2984 S 0.0 0.6 0:00.54 97m httpd
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MaxRequestsPerChild 100
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MinSpareThreads 25
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Code:
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# prefork MPM
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[Code].....
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Code:
sudo swapoff -a
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Code:
mahmood@server:~$ sudo swapoff -a
[Code]....
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