My query is i have a.sql , b.sql , c.sql files which needs to be executed using "$ db2 -tvf a.sql"; "$ db2 -tvf b.sql"; "$db2 -tvf c.sql" , script with which i can execute all these sql files in a single shot.
View 4 RepliesI have wrote a 1 line command that parses a file, locates the IP Address in the file and then trims the output the way I want it, and then sorts numerically and by uniqueness and then >> appends to output.txt
I can get all the IP's into 1 file "output.txt", but what I am really looking for is some type of way to create a text file, for each IP it finds labeled xxx.xxx.xxx.xxx.txt and also put that ip address into that file..
xxx.xxx.xxx.xxx = the ip address it finds
I am running an application called QuantiSNP [URL]. The binary file is "quantisnp2", called upon in the "run_quantisnp2.sh" supplied by the authors. I am only able to run the application for single file processing (e.g. 1 input file for 1 sample; I can't run the batch file processing because I don't have the necessary BeadStudio report files, which has different formatting for the input files).
The difficulty is that I have 300 samples (300 unique sample IDs) and 3 input files for each sample for a total of 900 runs of this application. I am wondering how would I be able to automate this process as a shell script instead of basically manually changing the sample ID and respective input files every time a run completes? I bolded the single file processing shell script command line options below that need to be changed for each sample/input single file processing run. The command line option "--sampleid" is for the name given to the processed output files corresponding to the sample of interest and there are 3 input files for each sample.
/home2/jason/QuantiSNP/quantisnp/linux64/run_quantisnp2.sh /home2/jason/QuantiSNP/MCR/v79/ --config /home2/jason/QuantiSNP/quantisnp/config/params.dat --levels /home2/jason/QuantiSNP/quantisnp/config/levels-affy.dat --outdir /home2/jason/QuantiSNP/quantisnp_out/ --sampleid sample1 --gender female --input-files /home2/jason/files/sample1_input.txt
Note that each sample has 3 input files, for a total of 3 runs of "quantisnp2" for each sample. e.g.
SAMPLEID INFILE
sample1 /home2/jason/files/sample1_input.txt
sample1 /home2/jason/files/sample1_input2.txt
sample1 /home2/jason/files/sample1_input3.txt
[code]....
I want to compare the following two tab-delimited .txt files (both were subsets of the original files) by comparing Columns 3 and 4 simultaneously. It is easy to compare C3 because both C3s are just numbers. But how to compare C4s?Basically, in File1, "G,G" = G in File2, "C,C" = C in File2, "A,A" = A in File2, "T,T"= T in File2.In File2, A/T in Column4 just equals "A,T" or "T,A" in Column4 of File1. C/T in Column4 just equals "C,T" or "T,C" in Column4 of File1, and etc.
File1:
C1C2 C3C4
ih509rs12345467244750"G,G"
ih499rs6049687244911"C,C"
ih508- 7244977"A,A"
[code]....
Is there a firefox add-on to script HTML and/or Javascript directly inside firefox
View 1 Replies View RelatedI use a mencoder line to convert .avi to .mpg (dvd player compatible), it works well but i can only do one file at the time. It requires giving the input and output directories and the files name. I tried using (*.avi *.mpg in the command) on the directory but it just add up all the .avi and convert them into one huge .mpg. My goal is to have a script that would convert all the .avi files from a directory to the same amount of .mpg and also keep the naming of those files. Here is what i work with on single files:
Code:
mencoder -oac lavc -ovc lavc -of mpeg -mpegopts format=dvd -vf scale=720:480,harddup
-srate 48000 -af lavcresample=48000
-lavcopts
[code]....
I feel kind of embarrassed posting here, but this is technically a scripting sub-forum. Here is the problem. I have a folder with various files which include .txt files as well
How can i redirect same content to each of the .txt files in the folder?
I have tried
Code: $ echo "hello" > *.txt
-bash: !": event not found Code: also cat ~/otherdir/test.txt > *.txt
-bash: *.txt: ambiguous redirect Can anyone help me with this?Ok i solved it
Code: #! /bin/bash
for file in *.txt
do
echo "Text that needs to be written" > $file
done
I want grep multiple files:
let abc.1.abc.2,abc.3,abc.4
I use grep <pattern> abc.* to read the files. But here grep read files in the order of 1,2,3,4 . I want to to grep the files in reverse order like 1st the abc.4 file will be read and abc.1 file will be last.
Is this possible ?
how i could compile for example: a tutorial file of cantera open source files. when i do :g++ example.cpp -o examplei get huge errors such as the header files are not here,...please tell me how i could compile it. ofcourse i have configured the full opensources and i see in /usr/local/cantera/binthat the files are there but i still can not compile and execute any cpp file.
View 2 Replies View RelatedI have a folder which includes bunch of folders each having data files in them. [ Folder A has F1, F2 F3 ..... F1000 folders in it, and F1, F2, F3 ... each has about 10 different files named FILE 1, FILE2, FILE3 .... in them.
I am interested in File 1 of each Folder, because that contains the data I need in it. More specifically, that File1 s have a line "ANSWER=..." in them, and i need to get that value of the ANSWER from each file. So doing it by hand is so hard, so I need to write a script that will scan all folders and give me a list of values of eache ANSWERs.
I am looking for the quickest way to do multiple searches for different files.Here is the scenario: I want to search for various icons one by one in a script. Preference is for the gnome icon theme.
The echo piped into grep part seems to take a long time. Is there a quicker way of doing this?I do not want to use slocate, sqlite or the like since that will require admin privileges to update the database and/or extra dependencies.
I have written FORTRAN code to calculate density profile. This code will open two files ( topology and x,y,z trajectory). The trajectory file contains XYZ data coordinates for multiple frames (about 20 or 100 frames for instance). One frame contains 20736 data.
Previously this code was written to open ONLY one input XYZ data file and do the calculation and would dump the results in separate file and it was running without problem. Recently my data file get bigger in size, so I decided to break the single XYZ data file into few small parts.
Now I have modified the code so that it calls the parts of the XYZ data files ( eg: maltoTHERMO_10Frames.traj, maltoTHERMO_20Frames.traj,... and so on) and do the calculation and dump the results in the same result output file. I have tested this code just with openning the XYZ coordinates and printing into another file to see wheather it collecting the data sequently and it was working fine.
This code supposedly read the x coordinate data and calculate distance and put a count accoding the criteria in the approperiate bins. But when I let the code to do the calculation it stop and shows error. (I have indicated as !** in the code). If I enable this line, it shows error but if I disable this line, than the code do collect only the XYZ coordinates.
The code is as below:
Code:
module all_parameter
integer,parameter :: MAXATOM=20736!CHANGE
integer,parameter :: midwater=1500
integer,parameter :: TOTALFRAMES=20
[Code]....
compiling and linking using gcc: What does a file name with a suffix '.a' represent? If I have multiple .c and .h files, how can I link them together? How can I create the .a file?
View 6 Replies View RelatedI am working with DM355 target board. Here we record. The video coming from IP cameras. Now I have to write c program for copying. The recorded avi files with date and time to NAS server using scp. I wrote a script to copy single file to NAS server.
#!/bin/bash
DATE=$(date +%Y%m%d_%H_%M_%S)
mv Camera1.avi Camera1_$DATE.avi
scp Camera1_$DATE.avi root@192.168.1.4:/root/test/
mv Camera1_$DATE.avi Camera1.av
But I have to write c program for copying multiple avi files with Date and Time to NAS server.
I want to change some HTML in my files (80+ so I prefer not to do this by hand). I got a script to replace a string in files, however the HTML I want to replace contains an enter (and tab of 4 spaces) (explanation below) Does someone know how I could update my HTML by using a function in Linux?
I also found sed but don't know how to use it with the enter (linenumbers will not work because they variate)...
[Code].....
I'm trying to change a group of cpp files to one shared lib. I have created a shared lib with a single file. I then did this with a group of files. The difference in what I'm doing is that before with the single file, .a, was added into a single .o file. Now I'm trying to add it to my main.cpp file which is NOT a .o file. I'm now getting these compiler errors from the main.cpp where is doesn't seem to recognize the semaphores.Example Error: undefined reference to `sem_wait'If I were not to use the share libs this compiles and runs as I expected it to.Something tells me this is a compiler flag issue, at least I hope it is
View 1 Replies View RelatedIf I remove all the template stuff, it works.
whats going on here?
I've been hitting my head against a wall for awhile with this one:As the last part of some data analysis I performing I would to construct a matrix from a series of different files. These files have the format:
file 1 file 2 file 3
AAAAA .1 AAAAA .1 BBBBB .1
BBBBB .2 BBBBB .1 CCCCC .9
[code]...
I've been trying to sort this out for several hours and I?m totally lost? I?ve been searching around, but haven?t found the solution to my problem. I have a directory with 100 files. I need to copy 10 lines of each files (let?s say from line 45 to 55) into one unique file. So I guess I could use sed ?w, but I didn?t manage to write the right script. I also tried using a loop to create 100 different files, each one with the 10 lines) to concatenate them later on. But I only got 1 file, not 100.
View 12 Replies View Relatedbash script to give sensible names to a large number of photos. I hope to be able to run a script with an argument which will become the filename followed by a number beginning at 1.
Code:
./file_rename.sh Summer2009_
Summer2009_0001
Summer2009_0002
Summer2009_0003
[Code]....
I'm playing around with a bash script to pass files to a program (such as VLC). I thought something like this would work:
vlc $( ls | sed 's/ /\ /g' | tr '
' ' ' )
ls shows the files in the current directory, then sed changes spaces to " " (to escape them) and finally tr removes the line breaks. I end up changing:
01 - Music Track.mp3
02 - Another Track.mp3
to
01 - Music Track.mp3 02 - Another Track.mp3
"vlc 01 - Music Track.mp3 02 - Another Track.mp3" works if I type it manually but my script reports a problem with `-'
It seems it's not escaping the spaces.
i have lots of files with dots insde file name for example:
document.1.is.bigger.doc
resume.version12.doc
10.photo.www.cnn.com.jpg
i want to rename all files in that directory to be the same (with same extention) but convert dots to underscore "_"
how can i do that on bash script / php.
I have this cool bash script that I worked hard on. But it broke down when it can across files that had non-English characters. Another small problem was getting it to descend into a directory. If it renamed a directory it would not descend into that dir to rename the other files. I would have to run the script twice on the same directory.
Here is the script:
Code:
find -type d -o -regextype egrep -iregex '(.*.ogg|.*.mp3|.*.wav)' | while read s
do
rename -v 'y/A-Z/a-z/' "$s"
done
find -type d -o -regextype egrep -iregex '(.*.ogg|.*.mp3|.*.wav)' | while read n
do
rename -v 's/ /_/g' "$n"
done
A French name like this:
Code:
Chateau De Sable (imagine accents above the letter a)
became this:
Code:
ch303242tea_de_sable
This is not what I wanted.
Why would the script not descend into a directory after it was renamed?
Code:
anisha@linux-uitj:~/junk> ls -R
.:
include src
./include:
template0.h template0.h~ template0.h.gch
[code]....
To redirect standard output to multiple files:
Code:
echo Test | tee file1 file2
My problem is that the word "Test" still displays to the screen? I want same effect as:
Code:
echo Test > file1
but with multiple file redirection.
I have 3 c++ files, classdef.h (header file with class definition), methods.cpp (class methods) and program.cpp - the program itself. Both .cpp files have
Code:
#include "classdef.h"
in files. How I can link the files together and compile them in one executable program? I am using Geany IDE for coding.
I have a large file 'NS0923.csv' with data like the following. There are two records in this multi-record sample.
Code:
E60898,4578910,03/06/09,BEN BOYD RD,61,82,,,127,3,,52000.3046.001,3155,4.00,,PLT,1356,1.00,05/06/09,Y,Y,0551
,,,,,,,,,,,,4057,1.00,CLEAN CAR SHARE SIGN,LAB,0551,1.00,,,,
[code]....
2. I still have to create a file 'transaction.csv' that should retrieve data from $13 - $15 with the identifying column $1. Required output:
Code:
E60898,4057,1.00,CLEAN CAR SHARE SIGN
3. And finally another file 'quantity.csv'. Retrieving data from $16 - $18 with identifier $1. Required output:
Code:
E60898,PLT,1356,1.00
E60898,LAB,0551,1.00
E60898,LAB,3065,1.00
[code]....
Groovy is an object-oriented programming language for the Java platform. I do not have experience in Java, only perl and shell scripts. Recently I have been asked to maintain a software written in groovy (also to make enhancements). So can I learn groovy without knowing java language. or isit I have to learn java before venturing into groovy.
View 1 Replies View RelatedI want to remove duplicate or multiple similar lines from multiple files. I.e. if I have four files file1.txt file2.txt file3.txt and file4.txt and would like to find and remove similar lines from all these files keeping only one line from these similar lines. I only that uniq can be used to remove similar lines from a sorted file.
View 9 Replies View Relatedsome basic programming/scripting/etc. ability but I am not able to do what I now need to do. I would like to have a link on a website that when a user clicked on that link, one script or another would execute based on what operating system that person is using. To wit: If a Mac User clicked on it, it would run a terminal script and would set up a served printer for him; if a PC user clicked on it, it would run a script to set up the served printer on his machine, you get the drift. The printer is being served on a Windows Server 2003 machine, the users are NOT domain users, the print server is also hosting the files, scripts, webpage.
View 11 Replies View Related