Fedora :: PyMOL Display Becomes Distorted ?
Dec 6, 2009
I'm running PyMOL version 1.2r2 on Fedora 12 with python2.6.
Only for a second or two will molecular models display correctly in the PyMOL viewer, and then the image becomes distorted. As I rotate the model, it displays correctly, but then almost immediately after I stop moving the model, it becomes distorted again.
The attached images show the display before and after the distortion.
This is some of the information that the PyMol program prints as it loads.
Quote:
View 2 Replies
ADVERTISEMENT
Sep 18, 2009
I am having an issue with my GUI desktop display. I switched from the desktop to a virtual terminal using Ctrl+Alt+F2. Upon returning to the GUI desktop (Ctrl+Alt+F7), my display is all garbled up. I tried changing the resolutions, and it does not make a difference. I tried rebooting and the display is still bad.
View 1 Replies
View Related
Feb 10, 2010
I am new to Ubuntu, I installed the latest version and when I turn it on I get like a distortion of the screen, I would gladly post a picture of it but I have no where to post it here. I am running Amd Opteron 175 with DFI Expert and GeForce 7800GT I made a partition on my Vista. I uploaded the pictures as you can see it has the distorted window in background and it just sits there saying 128%.
View 8 Replies
View Related
May 12, 2011
I like to keep my pymol molecular viewer as recent as possible. With svn and compiling it used to be easy, up until ubuntu natty. Now I get the following error every time I try to compile:
layer1/Scene.c: In function SceneClick:
layer1/Scene.c:4557:11: internal compiler error: in set_jump_prob, at stmt.c:2319
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-4.5/README.Bugs> for instructions.
error: command 'gcc' failed with exit status 1
This is for EVERY version I have tried. I have even downloaded the source code you can find in the ubuntu repositories (current version for 64 bit is pymol 1.2r2) and tried to compile that one, just as prove of concept. I still get the same error. I think I might need something else beyond what I have already, because if the package maintainers could build the older version for natty, I should be too, with the proper packages, shouldn't I?
View 9 Replies
View Related
Mar 12, 2010
I'm running Fedora 11 on a Dell and all of the PNG and JPEG images are distorted.
View 1 Replies
View Related
Jun 4, 2011
I have a problem with the audio output in Fedora 15. It seems 'dirty' to me, like with a lot of distortion. I use for the output a nice USB DAC that seems to run very good with Ubuntu and Windows, strangely with Fedora isn't the same. I say strangely because the sound pipeline must be very similar to that of Ubuntu, no? Kernel, ALSA, Pulseaudio and so on. How could I improve mine audio output? Tried with Flash videos and Audacious audio player. Lowering audio output (like to 50%) greatly improve audio quality! Why is permitted to the system to go over and distort?
View 5 Replies
View Related
Jan 27, 2011
Streaming audio is distorted. I think this is my soundcard
NFORCE - NVidia nForce2
NVidia nForce2 with ALC650F at irq 20
View 1 Replies
View Related
Aug 29, 2009
I am running latest fc11. the startup sound (desktop-login.ogg) always plays distorted. it plays a chord or two, slight pause, plays another chord, etc.. skips about as much as it plays. i found if i run canberra-gtk-play with the ogg file from a terminal, it plays fine. i changed it to play /usr/share/sounds/startup3.wav, but it also plays distorted during startup. plays fine from a terminal or thru natilus. i have installed the pulse-audio through the "perfect" guide.
View 4 Replies
View Related
Nov 19, 2009
New build to F12. Sound was fine in F11. Now, massive distortion. I have tried every possible permutation of settings. With the main volume control in the top taskbar, there are two positions of level setting where the audio drops to a normal level and sounds OK but any application changing the level or starting to use the Pulseaudio changes the level and its loud and massively distorted again.
In the Pulseaudio manager->sink->alsaoutput.pci-0000-00-11.5.analog-stereo -> properties-> show volume meter, the audio is always maxed out in level. I have tried everything, its unworkable right now. Its possible to start alsamixer from terminal and adjust settings for good audio but any future change reverts to distortion. All changes in Pulseaudio Dev mgr or vol control etc change the audio as they should but do not affect the problem.
View 9 Replies
View Related
Mar 27, 2011
Graphics is getting distorted whenever I move windows along the screen. This happened soon after I installed KDE desktop and compiz fusion on my pc. I am having 1GB ATI MOBILITY RADEON HD 54 graphics card (Seems like that was the problem). The first fix that I tried: Installed qt-devel compat-libstdc++-33 and then created an xorg.conf file by installing system-config-display and edited the file to include radeon under drivers then restarted --> this didnt work Compiled ATI drivers for linux ---> this also dint work However, I can view the o/p clearly when I type glxgears Seems like the issue is with this. But I donno how to change this
glxinfo | grep direct -i
glxinfo | grep OpenGL -i
When I run the above command, the o/p includes direct rendering: yes" and also various OpenGL information concerning for "Mesa" but not for "ATI Technologies" I am facing this issue on KDE as well as Gnome.. In KDE, if I check activate Desktop graphics then I would get automatically logged out. In gnome if I select "Desktop Effects" then I get a message "3D acceleration not supported".
View 6 Replies
View Related
Jan 14, 2009
Im trying to install Fedora 10 on to my HP Pavilion a340a (full product specifications: [url] ), i boot from the cd and it says "Automatic boot in 10 seconds..." etc, i get past that screen and am then at a screen with 2 shades of blue and a white bar moving at the bottem of the screen towards the words "Fedora 10", on the next screen, the log on screen, all the text is jumbled up and distorted, and everything appears frozen, except that i can move the mouse. I am not sure what the problem is but i know its not the cd because after having problems with hp pc i decided to try it on my Acer Extensa 2300 laptop (1.5ghz, 1.2gb ram, 40gb hdd, 32mb intel integrated graphics) and that installed fine, without a problem. This has led me to beleive that Fedora may not be liking the intel graphics on my HP Pavilion, and i dont know why. i really want to use Fedora 10 on my desktop. I should mention that i want to dual boot Windows XP and Fedora 10 on Pavilion, windows is already installed.
View 7 Replies
View Related
Jun 29, 2010
I did not have any /etc/X11/xorg.conf, so I read on these forums that system-config-display would create one for me. I ran system-config-display and it created an xorg.conf. But now my display is all messed up!! So, I deleted the xorg.conf and nothing changed. Why on earth would the display still be messed up if I deleted the file that was causing it?? Does system-config-display change somethign else?
View 14 Replies
View Related
Dec 1, 2010
I have installed Fedora 14 Security Spin, and want to display all disks & partitions available in a GUI display. How can I achieve that?
View 1 Replies
View Related
Aug 11, 2010
When my laptop (Asus X83VM) first boots up and Lucid (10.04) loads, my top panel on the right hand side where the power button, date, user name, volume control, mail icon, battery level, etc, is all 'garbly-gook.' By 'garbly-gook' I mean icons are over-lapping and missing. If I move the panel to a different location (right or left, but not bottom), the panel seems to reset and is no longer garbly-gook.
View 6 Replies
View Related
Jan 15, 2011
For some reason or the other, after some time the graphics on my computer becomes distorted. I had this issue before reinstalling my operating system, I thought that reinstalling the operating system would fix these issues, but they still remain.
Also, I never encountered this issue before upgrading from openSUSE 11.2 to openSUSE 11.3. Of course, restarting my computer fixes this issue.
An example of what I am talking about can be found here:
Specifications:
openSUSE 11.3 64-bit
Xorg-X11 7.5-11.3
View 9 Replies
View Related
Jul 12, 2010
I just installed ubuntu and found out some programs gets the graphics distorted. I attached a screenshot of the problem.
View 5 Replies
View Related
Oct 28, 2010
The top panel on my desktop, on the right side, which has a Session Applet, the clock Applet, the Indicator Applet, and the Notification Applet.Sometimes, when I boot, they are all distorted (See Image), and I have to manually delete the applet and add it again to fix it.This seems to happen randomly on certain boots, and I'm not sure what causes it.However, it only started doing this after I installed NVidia's drivers.
View 4 Replies
View Related
Feb 11, 2011
how do i fix the font issue (shown in the attached pic) in firefox using ubuntu 10.10?
View 3 Replies
View Related
Jun 9, 2011
I run two sound cards on my system, one dedicated while the other is built-in on my motherbard.
Code:
cat /proc/asound/cards
0 [NVidia ]: HDA-Intel - HDA NVidia
HDA NVidia at 0xdfff0000 irq 23
[Code].....
I am not able to get any sound recorded through my mic using my XFi card. It records the sound my computer makes, thought. In other words, if I play a song, it'll play through the capture channel making people on voip application hear it. For some reason. But I am not able to get any sound through the mic.
I have tried to mute and unmute every channel in alsamixer, and tried to change the soundcard profile as well in gnome sound preferences. No luck.
If I use my NVidia built-in sound card however, I am able to talk. But after a random period of time, the sound through my headphones begin to distort, badly, while the voice from my mic comes through clear. People can hear me clearly, but I can't hear them at all because of the distortion. It sound really, really bad.
At first I thought it was a bug with skype, but it happens in other voip clients such as gTalk.
View 7 Replies
View Related
Sep 28, 2010
I've just installed MPlayer from source into my Ubuntu 9.04 on a Lenovo N500 Laptop (GPU: nVidia GeForce 9300M).Sound is ok, only the view is distorted. And also, the first track of dvd (where the usual warning against copying dvds is displayed) shows fine no distortion in that still image.
View 5 Replies
View Related
Apr 27, 2011
I'm using Debian Testing and I have a little problem with the fonts, fonts behave somewhat strange. Usually happens with Iceweasel, but I've noticed sometimes in the window list panel or terminal. To give you an idea of what I speak, I leave the image:
Look at the letter b, and not always the case with that letter, sometimes the S or L. I've tried several fonts. Even deleted the folder. fontconfig, but still happening. Has anyone had a similar problem? It can be a server problem with graphics? Using xserver-xorg-video-intel
View 4 Replies
View Related
Apr 11, 2011
I'm getting this weird behavior when I have Desktop Effects enabled. When it is on, it's like there are two or three vertical and horizontal lines running across my screen that distort any of certain font characters that are under them. In some cases these characters are trimmed slightly, in others they have an odd skew to them, and in still others the letters are completely removed/missing/invisible. With Desktop Effects disabled, everything appears as normal. I have attached a screenshot in which you can see there are at least three letters missing from the left side (Desktop Effects enabled) and not from the right side (Desktop Effects disabled). There is a missing 'l,' a trimmed 't,' and a distorted 'p.' I'm on a one-week-old 11.4 install with nVidia drivers installed from that repo.
As far as I can tell, Desktop Effects works with few other issues, although there are some aggravating ones (having to click task tray items multiple times to get a response, multiple windows highlighted in the menu bar as though they all had focus, etc) that I will look into once I get this one key issue taken care of.If any other diagnostic information might be useful, please let me know and I will provide ASAP.
View 5 Replies
View Related
Apr 12, 2011
First I tried to install suse 11.4 64 bit from the Live CD, but when I tried to install, the screen was totally distorted (only the mouse pointer was possible to see with no problem).
So I tried to install from the DVD. This time the graphical of the installation worked perfectly. So i installed KDE. (the .iso is perfect, i used the md5) Everything normal until the Login screen, again is totally distorted, and can observe only the mouse. But I could log in normally just typing the password and pressing enter, it made ​​the normal sound of suse opening the session, but remained totally distorted the image.
My computer is: HP Pavilion dv6000 - AMD Turion X2 64bit, with NVidia chipset (GeForce 7150M / nForce 630M). The suse 11.3 64bit was operating normally, with the NVidia drivers, but i installed some package that kde did not work anymore. So I decided to install 11.4.
View 4 Replies
View Related
May 12, 2010
Hi, I have a Creative HS-1200 headset. When I am listening to sound through it, and something makes a motion on screen(compiz, movie...really anything) then the sound is distorted. Like it takes a nanosecond pauses to redraw. This does not happen with my normal soundcard. Can anyone tell me how can I fix this?
View 3 Replies
View Related
Jul 6, 2010
I did a clean install to 10.04. Not too many issues except any sound I play sounds like it's underwater and pops while playing. I have tried to do the Pulse Audio install, but every time I loaded pauvcontrol (I think was the title), it would pop up "Connection Failure: Connection Refused." I tried to follow other guides, but they'd all fail because I'd be missing half of the files it changed. I have a Creative Labs X-Fi Fatality card that has given me troubles in the past, but usually, it works. I tried to install Creative's open driver, but again, I had an error when I attempted to Make the directory.
View 6 Replies
View Related
Jul 18, 2011
Have been using the exact same hardware setup for a while now (last 5 or 6 releases) and since 11.04, occasionally my sound will go really strange and fuzzy / distorted. It usually happens when I change music tracks I am listening to, but it will then effect all system noises. It will then go away as suddenly as it happened, again if I pause the track a few times to stop the distortion.
View 4 Replies
View Related
Mar 16, 2010
I'm trying to use text2wave. I have a .festivalrc file and a voice selected. It works when I play a text file. When I make a text2wave file and play it back with aplay it sounds distorted. I used this command
[code]...
View 2 Replies
View Related
Oct 1, 2010
I recently installed Debian 5.0 (Lenny) on a Dell Inspiron 1545 laptop. I have been banging my head trying to figure out why my laptop display (15.6" optimum resolution 1366x768) is only running at 1024x768. This was not a problem in Ubuntu even as far back as 8.10 (Intrepid Ibex) which came pre-installed.
I am running kernel 2.6.32 (from Backports) to get WiFi to work and it still hasn't remedied the video oddities.
How do I either:
1) Letterbox the 1024x768 so that it isn't distorted?
or, more preferably,
2) Display in the full 1366x768?
My video card is:
00:02.0 VGA compatible controller: Intel Corporation Mobile 4 Series Chipset Integrated Graphics Controller (rev 07)
I also have the xserver-xorg-video-intel driver from the stable repositories installed.
View 6 Replies
View Related
Aug 1, 2011
It is well known that mencoder can be used to encode video to be burned on DVD with a tool like dvdauthor. The whole procedure is described here:
7.8. Using MEncoder to create VCD/SVCD/DVD-compliant files
Sound for a DVD is normally encoded with AC3. I encountered some cases where the encoded sound was badly distorted. As it seems, the default for the input changed to float at some point. The fix for this is to use:
Code:
acodec=ac3_fixed
instead of "acodec=ac3".
View 1 Replies
View Related
Jan 27, 2010
I had to unplug the computer by the power cord and when I boot up I see a distorted brown brick like screen after the login and before the loading screen. It's happened before and it went away over time.
View 3 Replies
View Related
