Programming :: Storing Grep Output To Feed Awk To Retrieve Entire Records Matching Variable

Jul 28, 2010

I have two files :

FileA
prot1
prot5
prot9
prot15

[Code]....

What I need to do is to extract from fileB the fields containing only the strings in fileA.

I thought awk could do the job easily with :

Code:
awk 'BEGIN { RS = "###" } /'$variable'/' fileB > output

where variable would maybe be the output of grep from fileA. So can I store the output of grep in a variable to use it afterwards with awk ?

something like that:

Code:
result=`grep prot. fileA` ; awk 'BEGIN { RS = "###" } /'$result'/' fileB > output
but that doesn't work. I'm always getting the entire fileB.

The output of grep get stored in the variable, I verified that with echo. So there is something that I just don't get... It seems to me that the above line should work.

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Programming :: Storing Output Of "time" Command To A Variable

Jan 21, 2011

In my script, I need to get execution time of a command (say 'ls') in mili seconds level. For this i tried using "time" command to retrieve the total execution time in milli seconds. But, the problem is that, how to save the output of time command in a variable. The format of the command is like "time ls -R /opt" Going further, the o/p of 'time' command is:

real 0m0.003s
user 0m0.004s
sys 0m0.000s

Here, in my script, I would like to use only middle line "user 0m0.004s" saved to the variable but unable to find out the way.

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Feb 8, 2010

On command line I have no problem storing a variable e.g

Code:

:~/bin$ process=`ps -ef | awk ' $8 == "idesk" { print $2 }'`
:~/bin$ echo $process
26736
:~/bin$

When I try to incorporate this into a shell script I get a blank.

Code:

:~/bin$ cat process_idesk
#!/bin/bash
process=`ps -ef | awk ' $8 == "idesk" { print $2 }'`

[code]....

The process_idesk script has been chmoded to be executable by the user. I'm sure there must be a silly omission on my behalf.

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May 1, 2011

My script.

This is may script:

Code:

Problem: Output file doest not exclude the values in grep -av

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Feb 3, 2010

I would like to grep two numbers out of a text file, and divide them.

Here is the script code...

It feels like grep saves a new line too? or what is happening? i simply can't divide them, as it handles the variables as they are empty (and prints the two numbers although they were not printed

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Oct 19, 2010

I have this complex log file filled with entries like

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sysName: test1.local

[code]...

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Programming :: Grep For Variable In A Bash Script?

Aug 19, 2010

I've tried every combination of ' " that I have come across in similar threads on the forum but no luck.. I have 2 files

strings.txt: contains a list of numbers, 4 digits per line file.
txt: contains a lines that I want to grep for the strings.

for example:

>cat strings.txt
3214
8746
2411

[code]....

if I echo $i in the loop, I print out the contents of strings.txt If I put 3214 in place of grep "<$i>" file.txt I get "carls phone number is 3214"

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Nov 10, 2010

Code:
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I use double quotes rather than single quotes because of the shell variables. I would have thought this would cause the shell to expand the "*" but this doesn't seem to be the case.

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Mar 8, 2011

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Apr 7, 2009

I am trying to use a shell script to find a string in a file and do something when found. code...

What should happen is pppd will start in a different process and stream it's output to pppdout. pppdout should be created in the current folder. Then the script should periodically check the pppdout file for the string Script (which eventually will appear, some seconds later) and when found exit the script. Ultimately the script will do something useful when the text is found. However, the output from the program is a repeating: 'scriptname.sh: 12: FOUND: not found'

Where scriptname.sh would be the name of your script and 12 refers to the line with 'done'.

Why does grep not find the text, or at least why deos my script not check the grep output correctly?

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Jan 10, 2010

New to ubuntu and shell scripting in general... currently I stored some data into a text file. Right now, I would like to output the data from the text file and store it into a variable. Here's what I have so far:

READ_FILE=$(cat $FILE_NAME)

This definitely works and READ_FILE has the necessary data. However, this command will trigger an output to std output and I will see data on the screen, which is not what I want. I tried:

cat $FILE_NAME | $READ_FILE

and various other variants of this. It does not output to std output but neither does anything gets stored into $READ_FILE. I tried:

cat $FILE_NAME >> $READ_FILE

and it arrived at an error of "ambiguous redirect".

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Jul 16, 2010

Linux kernel 2.6, Slackware 12.0.

I do grep -r string_1 .*txt. Is the path first expanded by the shell? If not, then say, ./elem1/elem2/file1.txt would search for string_1. However, it will not in my system. Note: '.' (period) in .*txt is any char. '.' in ./elem1/elem2/file1.txt is current dir. Now, .*txt should be, as a regexp, zero or more occurrences of any char followed by txt, that is, any string with txt as a suffix.

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Jan 17, 2011

I have to save the result of ssh/grep into a file to keep the eol ("/n"):

ssh $SSH_OPTIONS $USER@$NODE "cd $LOG_DIR; grep -h '$pattern' log.*" > $file

So that when I grep on the local file again later, it can be printed out with original log lines. Otherwise, the log lines will be dropped and lines becomes concatenated into a single line, e.g., if I rewrite the script in this way, echoing the $result is not a good idea..

result=`ssh $SSH_OPTIONS $USER@$NODES "cd $LOG_DIR; grep -h '$pattern' log.*"`

is there some workaround that I can save it to a variable rather than file but still keep the eol? That will simplify my script and don't need to do all those I/Os!

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Feb 20, 2011

I have a bash script that calls a java class method. The method returns a string to the linux console when run independently. how can I assign the value from the java method to a variable in a bash script?running the script: java -cp /opt/my_dir/class.method [parameter]

output: my_string if added in a bash script:

read parameter
java -cp /opt/my_dir/class.method [parameter] | read the_output
echo $the_output

the above doesnt work, I also tried unsuccessfully:

the_output=java -cp /opt/my_dir/class.method [parameter]
the_output=`java -cp /opt/my_dir/class.method [parameter]`
java -cp /opt/my_dir/class.method [parameter] 2>&1

How can i get the output stored into the_output variable?

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Jul 7, 2011

How can I use grep -Ev "pattern" not only to delete the matching "pattern" but to edit and save the file permanently as well

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Nov 26, 2010

I'm trying to manipulate a large text file full of records (metadata - one complete record per line). I need to delete every line on which certain words appear - there are five different words, all pretty simple all-caps strings with occasional whitespace. I tried using grep -v, which worked a treat, but only string-by-string. Ideally I'd like to run this as grep -v -f, where the file targeted by the -f contains the strings I need to match in order to delete the lines they're in.

i.e. grep -v -f filecontainingSTRINGS.txt targetfile.txt > outputfile.txt

When I try this, however, I don't get any matches - or more specifically, no changes are made in the output file. It works fine if there's only one string in filecontainingSTRINGS, but it doesn't work if there's more than one (I'm using newline as the delimiter). (Also my machine doesn't recognise /usr/xpg4/bin/grep - no idea what that's all about!)

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Apr 3, 2010

Suppose I want to account number of files beginning with abc , I can use "ls 'abc* | grep abc | wc -l", this will return me a number.
I want to store this number in a variable, say var1, so I tried
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I don't want to store the value to a temporary file and then read the value from that file. I think there should be a direct way to get the value, but don't know how. I know in tcsh, one can just use set var1='ls 'abc* | grep abc | wc -l', but it also doesn't work in bash. Can anyone give any clue about this?

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Mar 2, 2011

I have two table files with x (1st column) ,y (2nd column) coordinates and intensity (3rd column). I need to match these two tables and divide the intensities at the consecutive coordinates on the 3rd column. The problem is the size of the tables are not same and I want to ignore the lines if they are not in one of the other file.

Here is Table 1:

Code:
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-7.500-22.50037.952
-7.500-15.00060.962
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-7.5000.00014.348
code....

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May 23, 2010

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Jan 25, 2011

I'm trying to write a python script that will use the current user's name when interacting. Ex: when started, it should say "hello daweefolk" when I am logged in.
I've tried
Code:
username=os.system("echo $USER")
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What is the correct code?

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I am trying to do a find/grep/wc command to find matching files, print the filename and then the word count of a specific pattern per file. Here is my best (non-working) attempt so far:

wc `find . ( -name "*.as" -o -name "*.mxml" ) -exec grep -H HeightResizableList {}` ;

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Nov 22, 2010

I need to kind of grep within grep. My input file would be something like:

[Code]....

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For example:

Code:

Changing $files to "$files" eliminate these problems but causes that whole content of variable is treated as one string (one execution of loop).

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Apr 7, 2010

my script has a variable which comes in the form +00.00 +0.00 -00.00 or -0.00 (the numbers can be any in that form) for any that have a + symbol I need to remove the +, but if it has a - symbol it needs to stay.

i need to make a new variable with the string from the old variable btut without any plus sign. I have tried a lot of different ways with no success, each thing I tried either left the + or removed the entire string. I think this should work but doesn't

foo=+12.40
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I'm writing a command-line flash card program in Python. I've tried many existing applications, but none fit my specialized needs.

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That seems easy to put into a matrix. But what is the best way to put that information in a place where I can pull it back when I run the software tomorrow? Do I need to save the matrix to a CSV file, then convert the CSV file back to a matrix the next time the application is run?

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