General :: Install Bioinformatics Package Ugene1.9.3 On SL55 (RHEL55)?
Jul 2, 2011
I am trying to install bioinformatics package ugene1.9.3 on SL55 (RHEL55), which among other things requires qt-devel >= 4.5.0. From Qt website I tried to install Qt SDK 1.1.2 that includes Qt Libraries 4.7.3, etc. However, installer reports Missing dependency: /usr/lib/libstdc++.so.6 is needed for...
However, libstdc++.so.6 is present as link to libstdc++.so.6.0.8 in both /usr/lib/ and /usr/lib64/ ! What is the problem then?
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Jul 9, 2011
I want to add a Lacie external drive to x64 box with SL55, but it has only Firewire interface. After searching a bit the net I could not find a working solution how to make the PCI card and the drive recogizable by the system, even if I removed Firewire from RHEL blacklist. The system does not see this piece of hardware. Does anyone has a positive experience with RHEL/SL with that issue? Similar trends search lists only quite old treads - ane recent experience?
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Jan 18, 2010
I want to know good bioinformatics software repository for opensuse 11.1.
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Feb 16, 2010
I want to know which linux distro version is good and easy for installing bioinformatics software installation...
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Apr 6, 2010
How can i install src.rpm package on Red hat Linux ?
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Feb 16, 2010
i am totally newbie in linux.how to install tar.bz2?? please give me crystal clear command to open this file because a lot of threads regarding to this matter really crack my mind.
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Feb 17, 2011
I have two RHEL conputers that are causing me a bit grief in the user manager gui.One computer is kernel is 2.6.18-194.8.1.el5 and the other is 2.6.18-194.11.1.el5.I don't think that matters much but wanted to give you all the onfo I had.
> All the users on the these two computers do not have root access/rights
> When a standard user access the user manager they are not prompted for the root password and cannot open the User Manager.Is there a package I need to install?
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May 6, 2011
I am running Mandriva Linux 2010.2 KDE on my Dell Dimension 5150 desktop. Using the software manager, I tried selecting the gcc4.2-c++ package for the compiler but I get the message:
Quote:
the following package cannot be selected:
- gcc4.2-c++-4.2.3-6mnb2.i586
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Sep 16, 2010
I understand that I can specify nogpgcheck on the command line, or gpgcheck=0 in the repo file, but if I want to do it "right" how would I get the public key? And where should I have looked to find this without bothering the group? I looked in man yum and don't seem to find it.
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Nov 24, 2009
i am trying to install in my puppy 4 the gxine 0.5.903i already have downloaded it to My-Documents folder.However, each time that i try to install it using the package manager the file does'nt foundedThis is my firt time using Linux and i really like puppy
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Nov 17, 2010
I had upgraded from Samba to Samba 3x awhile ago. Which I found out that I didn't need to do because I have to update now 9 large patch releases which I have to install in order. Starting with the first one and I'm having Samba dependencies problems now. The patch releases to install are older than what's currently installed. Hopefully, once I get the conflicts resolved the rest should fall in line.
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May 9, 2011
how to install ssh2.so package. my ssh2.so went missing i think. i already google and search for it and try to install, and they fail at certain part.
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Oct 2, 2010
I want to install CmapTools in my desktop, which runs v.10.04. I have downloaded the .bin file from their site.Is there a way to install it using Synaptic Package Manager?
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Jul 28, 2011
I originally attempted to compile and install xmonad package by package, and the end result was this:
Code:
$ xmonad /home/adx/.xmonad/xmonad-x86_64-linux: executeFile: does not exist (No such file or directory)
X Error of failed request: BadAccess (attempt to access private resource denied) Major opcode of failed request: 2 (X_ChangeWindowAttributes) Serial number of failed request: 7 Current serial number in output stream: 8 I figured I left out a flag on the make file or something, so I tried the slackbuild packages next; however, the same error was present at launch.
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Jun 19, 2010
Where is the best path to install all files of package when compiling?
For example - I want to install ProFTPd, so there's an option
--prefix=/usr/local/proftpd
, which means, that all files after compilation (including binary and configuration files) will be stored here. As you know, all packages, which are installed via package system (like zypper on SuSE or apt on Ubuntu) usually stores its configuration files in /etc/ and binary files in /sbin/ and also stores a link in my $PATH, so i can run in just by typing proftpd (without /sbin).
The huge advantage of packages installed via package system, i think, is easy uninstall process. I'd like to be able to uninstall compiled packages also easy.
I think i could be able to create some batch file, which I'll be able to use like this:
uninstall --package=proftpd
And my script will find all proftpd files in usuall paths (/etc, /sbin) and remove it using rm.
Is there any best practices, where to store all these files, or are there any (dis)advantages of my first example (--prefix=/usr/local/proftpd)?
I really don't think, that it's nice to have 2 paths with configuration files and binary files, but maybe I'm misunderstanding the basic principals of Linux... :-)
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Aug 14, 2011
dpkg -i package.deb
Doesn't install package if it has not-installed dependencies.
What parameters do I miss to install that package with its dependencies from repository?
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Mar 10, 2010
I have jdk.rpm.bin package. When I run the command ./jdk.rpm.bin it extracts and automatically installs the package. I want to extract rpm package only and to install rpm myself not automatically.
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Mar 28, 2010
I am getting this when I build a project in JBoss Seam:
Code:
asookazian@asookazian-desktop:/opt/jboss-seam-2.2.1.CR1/examples/booking:10:30 PM:$ant clean explode
Buildfile: build.xml
clean:
initcopy:
initpoms:
[echo] Setting up dependencies
Build Failed
/opt/jboss-seam-2.2.1.CR1/build/common.build.xml:95: The following error occurred while executing this line:
/opt/jboss-seam-2.2.1.CR1/build/utilities.build.xml:18: Directory /opt/jboss-seam-2.2.1.CR1/classes/poms creation was not successful for an unknown reason
Total time: 0 seconds
How can I install Ant 1.7.0 (i.e. an older version of an existing package)?
Code:
asookazian@asookazian-desktop:/opt/jboss-seam-2.2.1.CR1/examples/booking:10:31 PM:$sudo apt-get install ant=1.7.0
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Version '1.7.0' for 'ant' was not found
I downloaded the zip file for 1.7.0 but I need to redo all the symbolic link stuff, no?
Code:
asookazian@asookazian-desktop:/usr/bin:10:34 PM:$ls -la ant | less
Code:
lrwxrwxrwx 1 root root 20 2010-03-23 06:15 ant -> ../share/ant/bin/ant
I'd like to keep both versions of the ant package in my Ubuntu 9.10 system if possible...
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Jul 6, 2010
I just installed Redhat Enterprise Linux version 5.1.x on my computer and need to install/add the package for gcc.
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Mar 15, 2009
Sometimes i have on some magazines or Internet Zip packages that are the answer of what i am looking for.
Wich tool and how can i do it? c Well, i am in position to say that i had downloaded from Internet or located the package in the Cd or DVD that comes with the magazine.
But now comes the big question. How can i put this package ( install) on my distro ???
Do i have to be a normal user or should it be root or su (superuser) ?
The packages that come with the distro is easy, because i select them and everything is done
As i told before, maybe this is a silly question, but i simple don't know how to install them and i need some of them to leave MS for good.
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Feb 6, 2010
Fedora 12 64bit. Is there an easy and reliable way to install *.tar.gz package after extraction? Instead of going through ./configure etc.
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May 12, 2010
i've just migrated my desktop machine to Ubuntu 10.04. My problem is that i've purged a package and can't install this package back. Because I can't see it in the aptitude or apt-get's package list. I think I have play with some configurations. How can i fix this issue?
Edit: The problematic packages are sun-java6* . I installed sun-java6-jdk from oracle's web page and installed other ones using APT.
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Aug 16, 2010
I am working on a project that sets up packages on the cloud.
For example, If i want to setup Drupal, i need seperate machines to maintain separate tasks, like mysql in one machine(cloud instance/node 1), apache server in another machine(cloud instance/node 2), etc.
So if drupal.rpm has dependencies apache.rpm(has deps too) and mysql.rpm(has deps too)
Is it possible in rpm package manager(yum) to handle such customizations & above requirement?
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Jun 23, 2010
I have been trying to install the NumPy package for Python on to my home directory, as I run as part of a server and do not have permissions to install new packages in the Linux server.
I have set up Python in my home directory, and have configured ~/.bash_profile to find my local Python (which works, confirmed by testing).
However, when I attempt to install the NumPy package, I get the message error: could not create '/usr/local/lib/python2.6': Permission denied Which I find strange because I do not see why it would need to install files anywhere except my local Python directory.
how I might be able to specify the directory in which files are installed?
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Feb 7, 2011
I am trying to install Adobe Flash Player on my operating system, my vendor is Red Hat. Then, when I click the Dump File of where I archived the adobe flash player, it states "No Packages were given for installation".So Now it does not want to run itself on the kernel, but I also noticed that there is a "Adobe v10 Bug" right next to where the rpm package was archived. Is there something I might have overlooked?
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Mar 5, 2011
what do I need to add to /etc/apt/sources.list? can't really understand the howtos and tutorials
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Apr 13, 2011
I have a tar.gz file which I extracted and then installed the software it contained using a property file. now, I need to automate that 2 step process into one. I am new to shell scripting and will be much appreciated if someone can guide me on how to accomplish that. below is my final opjective on this excercise.
1. excecute software_install.sh file which finds install.properties file and invokes the actual shell script that installs the product (odcpkg.sh)
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May 15, 2010
i wanted to know whether the gcc,g++ libraries are pre-installed i slackware 12.1 or not. if not then from where can i download them .how do i install them? how do i install the java jdk package also?
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Dec 15, 2010
I wanted to install this package to convert one Unix book into pdf. Since I have not set up the internet in the debian, I download the .deb files in winxp and transfer these files to my pen drive and then access it in the Debian. So I got all the 'depends' packages for the chm2pdf from the Debian Packages site and tried to install. Console was still asking for more dependencies. If I have got all the 'depends' packages which are required for chm2pdf, then why does it give problems ?
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Jan 3, 2010
I'm using a new Distro and after installing it and randomly searching for help on websites on how to install a .Deb file using dpkg at the konsole/terminal it says Bash : dpkg: Command not found . how is this possible ? Do I have to know about all the packages in the package manager to install this. slight difference for me ... knowing what I have and knowing if I need Apr93-323? (whatever) installed first or not ? The only thing I know is that I have the Iso image installed ... which is my linux distro . Where to go from here? because I usually go to a website site to find Software to install ...if I need it .back to the basics
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