General :: Bioinformatics Software Repository For Opensuse 11.1
Jan 18, 2010I want to know good bioinformatics software repository for opensuse 11.1.
View 3 RepliesI want to know good bioinformatics software repository for opensuse 11.1.
View 3 RepliesI am trying to install bioinformatics package ugene1.9.3 on SL55 (RHEL55), which among other things requires qt-devel >= 4.5.0. From Qt website I tried to install Qt SDK 1.1.2 that includes Qt Libraries 4.7.3, etc. However, installer reports Missing dependency: /usr/lib/libstdc++.so.6 is needed for...
However, libstdc++.so.6 is present as link to libstdc++.so.6.0.8 in both /usr/lib/ and /usr/lib64/ ! What is the problem then?
I want to know which linux distro version is good and easy for installing bioinformatics software installation...
View 2 Replies View RelatedI've been trying to get my wireless working on the livecd to make sure its possible before I install it, but, I get a ton of errors when I install RPM's
Code:
Traceback (most recent call last):
File "/usr/share/PackageKit/helpers/yum/yumBackend.py", line 1649, in install_files
txmbr = self.yumbase.installLocal(inst_file)
[code]....
RepoError: Cannot retrieve repository metadata (repomd.xml) for repository: fedora. verify its path and try again I get that one trying to install a driver installer from [URL]
when i was trying to install perl with fedora using yum: # yum install perl i got the following error: Loaded plugins: presto, refresh-packagekit Error: Cannot retrieve repository metadata (repomd.xml) for repository: fedora. Please verify its path and try again
View 3 Replies View RelatedWhen I tell yum to update i get this error, Quote: $ yum update Loaded plugins: presto, refresh-packagekit Error: Cannot retrieve repository metadata (repomd.xml) for repository: InstallMedia. Please verify its path and try again
View 4 Replies View RelatedHow to add a specific software such as wine repository in opensuse 11.2 without using installaion dvd...i tried several times..but each time it asked for installation dvd..can i manage to do the same without installaiton dvd...if yes ..kindly let me know the process in details.
View 1 Replies View RelatedI have Fedora 13 in a VPS. I cannot work with yum. I got this error: [Errno 256] No more mirrors to try # yum list Error: Cannot retrieve repository metadata (repomd.xml) for repository: fedora. verify its path and try again.
View 4 Replies View RelatedI am trying to configure DNS on my CentOS 5. When i am trying to install BIND using YUM, i am getting the following error.
Loaded plugins: fastestmirror Loading mirror speeds from cached hostfile http://mirror.centos.org/centos/5/addons/x86_64/repodata/repomd.xml: [Errno 12] Ti meout: <urlopen error timed out> Trying other mirror.Error: Cannot retrieve repository metadata (repomd.xml) for repository: addons. Pl ease verify its path and try again. I am able to ping from Linux to windows OS. But when iam trying to do
[Code]...
I have install fedora 12 (i686) from Live CD. Now i want to install some package. I typed comand like this:
Code:
yum install some_package_name
But i have an error:
Code:
Error: Cannot retrieve repository metadata (repomd.xml) for repository: fedora. verify its path and try again i looked at /etc/yum.repos.d:
Quote:
[fedora]
name=Fedora $releasever - $basearch
failovermethod=priority
#baseurl=http://download.fedoraproject.org/pub/fedora/linux/releases/$releasever/Everything/$basearch/os/
[code]....
[root@127 scott]# yum update Loaded plugins: presto, refresh-packagekit [URL]: [Errno 14] PYCURL ERROR 7 - "" Trying other mirror. [URL]: [Errno 14] PYCURL ERROR 7 - "" Trying other mirror. Error: Cannot retrieve repository metadata (repomd.xml) for repository: fedora.
verify its path and try again ...browsed through solutions like using yum clear and setting proxy in yum.conf
Here's the details to this mornings update error:
Error Type: <class 'yum.Errors.RepoError'>
Error Value: Error getting repository data for installed, repository not found
File : /usr/share/PackageKit/helpers/yum/yumBackend.py, line 3125, in <module>
main()
File : /usr/share/PackageKit/helpers/yum/yumBackend.py, line 3122, in main
code....
It mentioned bug report but I don't know where that is. I'll try later.
Today I installed Fedora12 from the DVD, so this is my first contact with all of you. The last years I ran very well with gentoo, but the time for system maintenance got to big the last few times I updated the system, so I decided to change and here am I. The Problem: My system is newly installed from the DVD and I was trying to run the first update, but got the following errormassage by KPackageKit:
Code:
Error Type:
Error Value: Error getting repository data for installed, repository not found
File : /usr/share/PackageKit/helpers/yum/yumBackend.py, line 3125, in
main()
File : /usr/share/PackageKit/helpers/yum/yumBackend.py, line 3122, in main
backend.dispatcher(sys.argv[1:])
File : /usr/lib/python2.6/site-packages/packagekit/backend.py, line 710, in dispatcher
self.dispatch_command(args[0], args[1:])
[Code]...
It occured after informing me about the amount of packages that need to be updated and a message about some dependencies that have to be newly installed. At the moment I'm a bit lost about what to do. Also I realy don't know which system-information would be useful - let me know and I will answer.
When I try to install some programs, like Asunder, I get the following:
Code:
[root@localhost theAdmiral]# yum install asunder
Loaded plugins: presto, refresh-packagekit
Could not retrieve mirrorlist http://rpm.livna.org/mirrorlist error was
14: PYCURL ERROR 7 - ""
Error: Cannot retrieve repository metadata (repomd.xml) for repository: livna. Please verify its path and try again
[Code]...
I installed Fedora 13 in my new system from DVD image. Now I want to update all repositories. I coul'nt update. error message as below: Error: Cannot retrieve repository metadata (repomd.xml) for repository: fedora. verify its path and try again
View 3 Replies View RelatedI cant get yum to work
every time I go to install something it gives this output code...
I installed FC10, but do not find xfig (command not found)..then I do password:xxxxxxx, and then do the following $yum install xfig, and I get the following error Loaded plugins: refresh-packagekit [URL].. [Errno 14] HTTP Error 401: Unauthorized Trying other mirror. Error: Cannot retrieve repository metadata (repomd.xml) for repository: adobe-linux-i386.
View 14 Replies View Relatedyum is completely broken. I cannot install or update any software. yum is always throwing:
Code: Loaded plugins: presto, refresh-packagekit Could not retrieve mirrorlist http://mirrors.rpmfusion.org/mirrorlist?repo=free-fedora-12&arch=x86_64 error was 14: PYCURL ERROR 7 - "" Error: Cannot retrieve repository metadata (repomd.xml) for repository: rpmfusion-free. Please verify its path and try again I have tried globally to disable the gpg check as stated in other threads. I have no proxies or such in yum.conf or in my bashrc. If I manually click on the link it will resolve in firefox so I am sure it is not my net connection per se, it seems yum or curl is adding a : to the end of the url thats why it wont resolve properly.
I have done a yum clean all , which didnt really help either. reinstalling the rpmfusion repos isnt an option either as I start getting curl errors in the terminal. I am really at a loss here and am completely out of ideas as I cant install any updates or software , at first I thought the repositories were having problems with the holidays but this has been going on for 4 days now. /var/log/messages isnt showing anything either.
[Code]....
I just installed Fedora Core 12 and when attempting use the update utility am receiving the following error:
[code]...
I updated my up to date F12 to F13. I have what must be a 640X480 display with no way to change it. I get an error:
"Error: Cannot retrieve repository metadata (repomd.xml) for repository: pgdg90. Please verify its path and try again" on all Yum commands so no yum installs are possible. I don't have the /usr/bin/GLX command So theAIGLX doesn't work.
I'm having trouble getting my fusion repos to work. When I try to install something that uses them I get:-
Loaded plugins: presto, refresh-packagekit
rpmfusion-free | 3.9 kB 00:00
http://download1.rpmfusion.org/free/...ta/repomd.xml: [Errno -1] Error importing repomd.xml for rpmfusion-free: Damaged repomd.xml file
[code]....
I did a clean install of Fedora 12 (AMD64) two days ago and I have been trying to update the packages. But it won't work. I keep getting these errors. I tried both Software Update and command-line utility to update. code...
View 4 Replies View RelatedI just did a fresh install of F14 using a Live USB. I can't do a yum update, I'm getting Error: Cannot retrieve repository metadata (repomd.xml) for repository: fedora.I've done a yum clean all and I've tried coping the .repos from another F14 system that's working fine.
View 4 Replies View RelatedWhile installing CodeLite on F13,there is some error:
[root@localhost ~]# yum install codelite
Loaded plugins: presto, refresh-packagekit
Could not retrieve mirrorlist
HTTP Error 404 : mirroslist
Error: Cannot retrieve repository metadata (repomd.xml) for repository: rpmfusion-free. Please verify its path and try again
what i should do to resolve this question?(the computer can conntect to network,because I'm in China?)
I have googling this question,but those methods didn't work
When i use command ( yum update ) in Terminal I take this output:
Error: Cannot retrieve repository metadata (repomd.xml) for repository: rpmfusion-free. Please verify its path and try again
I have try to disable "rpmfusion-free' but after this operation i can not take free packets and codecs for mplayer.
I recently registered a Red Hat 5 machine. It registered ok and was able to do a yum update. Now, yum update gives this error:
Loaded plugins: rhnplugin, security
There was an error communicating with RHN. RHN support will be disabled. Error communicating with server. The message was:
Temporary failure in name resolution
Could not retrieve mirrorlist <red hat mirror url here>error was
[Errno 4] IOError: <urlopen error (-3, 'Temporary failure in name resolution')>
[Errno 4] IOError: <urlopen error (-3, 'Temporary failure in name resolution')>
Trying other mirror.
Error: Cannot retrieve repository metadata (repomd.xml) for repository: rpmforge. Please verify its path and try again I can ssh into the machine, and I can open up Firefox and browse the web. I have another Red Hat 5 machine set up and working fine, and I've checked that the /etc/yum.conf, /etc/sysconfig/rhn/up2date, .bash_profile, and /etc/hosts files are all the same (except for hostnames and ip addresses). I'm fairly new to Red Hat, and I don't know what other configuration files to check.
I am looking for openjdk6-jre rpm for redhat 64bit. I followed the instructions provided in the below site : http://openjdk.java.net/install/
But when I try I am getting the below error: [root@DCTXVM20 hita]# su -c "yum install java-1.6.0-openjdk" Could not retrieve mirrorlist http://mirrors.fedoraproject.org/mir...-5&arch=x86_64 error was [Errno 4] IOError: Error: Cannot retrieve repository metadata (repomd.xml) for repository: epel. Please verify its path and try again
I installed centos 5.3 on my server one year back, it was getting update form yum till jan 2010. but now if i update it through yum it gives following error:
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* epel: ftp.jaist.ac.jp
* city-fan.org: download.virtensys.com
[Code].....
I am trying to install apache on centos-5-i386 (# yum install httpd) and get the following error:
==========================
[root@IDK3 /]# yum install httpd
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* base: centos.mirrors.tds.net
[Code].....
Edit: The url works if I leave out "repomd.xml" at the end; and the repomd.xml is exactly in that folder? i have downloaded the file but don't know how to use it.
Yum update do not respond and I get these exceptions. Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile [URL]... [Errno 14] HTTP Error 403: Forbidden
Trying other mirror. Error: Cannot retrieve repository metadata (repomd.xml) for repository: base. Please verify its path and try again I have search the forum but the suggestion have not help me resolve this issue. I tried both the mirrorlist and baseurl links in the CentOS-Base.repo file. I using proxy and have followed the instruction [URL]. When I run "yum --disablerepo "*" --enablerepo "rpmforge" list available" I get this
Loaded plugins: fastestmirror Error getting repository data for rpmforge, repository not found