General :: Simultaneously Execute 8 Instances Of A Program Until All Input Files Are Processed?

Sep 27, 2010

I have a machine with 8 cores. I have a directory of input files that I need to process using a non-parallelized program. I would like to write a script that works its way through a list of commands executing 8 commans (i.e., instances of this program; each with specific flags having to do with the current input file) until the list of commands has been exhausted. Is there an easy way to do this?

Code: -protein -refspec=lotgi_2713 -hmmset=lophotrochozoa_hmmer3 -sequence_file=Aplysia_californica.fas -taxon=ACAL

View 3 Replies


Programming :: Awk - Input From One Line - Execute Program - Input From Next Line - Execute Program

Sep 25, 2010

I have a file with two fields of numbers that I want to use as input for another program.


The above code does not work, as I think it would take the whole first and second fields as the input for one particular instance of the program 'inputbashangle'. What I want is to get the first two numbers from the first line of the file 'outfailtest', execute 'inputbashangle' with them, then move on to the first two numbers of the second line for all the lines of 'outfailtest'.

View 9 Replies View Related

General :: Run Multiple Instances Of Same Program?

Feb 23, 2011

In windows xp, i created another user account. Now i can run a second instance of any program by right clicking on it and selecting Run as. Is such a thing possible in linux (centos or ubuntu) in graphical environment ?

View 4 Replies View Related

Server :: PHP Files Not Being Processed In User Directories?

Mar 5, 2010

For some reason, my user directories don't seem to process php files. For example, server/~reduxtion/index.php forces the browser to download the file while server/index.php is fine.

View 1 Replies View Related

General :: Running A Program In Multiple Subdirectories Simultaneously

Jul 8, 2011

Performing commands in multiple subdirectories simultaneously. I'd like to run a program I've copied into every subdirectory which takes *.in files in the current directory as input files. I can find the program, but how do I tell it to run when I've found it?

View 1 Replies View Related

Ubuntu :: Give Permission To Execute As A Program To All The Files In A Folder?

Sep 2, 2010

I'm running WoW through wine. In order to install addons I need to give all the files in the program permission to execute as a program. the problem is I can't (dont know how) just right click the folder and give everything inside permission i have to open each one and give them all permission, which can quickly turn into hundreds depending on the addon. how to give permission to execute as a program to all the files in a folder at once it would save me a lot of clicking and time.

View 2 Replies View Related

Programming :: Simultaneously Execute All Perl Scripts Within A Folder?

Apr 27, 2011

Is it possible to simultaneously execute all perl scripts within a folder? How?

View 1 Replies View Related

General :: Sendmail-2 - Wrong Number Of Instances Of Process Sendmail - Expected Instances Equal

Jun 15, 2011

I have bees assigned a problem which states that :

sendmail-2: Wrong number of instances of process sendmail:, expected instances equal 1 but found 0

THats it...what exactly this means and how should i proceed for solving this problem...

View 1 Replies View Related

Ubuntu :: Cannot Run Multiple Instances Of A Program

Jun 29, 2011

If I have a program running in one workspace and then switch to another workspace and open the same program it switches back to the first workspace.

View 5 Replies View Related

Programming :: Managing Instances Of A Program?

Mar 23, 2011

I finished a program that connects to a remote server and does some stuff there for a while. What I want to do is to run several instances of the program to have different connections at the same time, and to be able to manage those processes automatically (for example, if the connection stops, detect it and reconect).

I guess I will have to use the pid of the processes and handle them somehow but I dont really know what to do because I haven't used c++ in a while and I never went that deep. All this will be running in suse, debian and/or yellowdog distros Maybe there's a tutorial or you guys know some tool that i can use,

View 3 Replies View Related

Ubuntu :: Japanese Input - 10.04 - SCIM Input Program ?

May 5, 2010

I would like to use Japanese kana (hiragana, katakana, kanji) on Ubuntu but everything that I've tried to get it set up and running isn't working. The Spanish that I have set up is working perfectly so far.

I've read, the SCIM input program should start up automatically when loading a program, it doesn't. When I have it loaded I cannot seem to get the input working.

View 9 Replies View Related

Ubuntu Servers :: Running Multiple Instances Of A Program?

Mar 11, 2010

how to run multiple instances of a command line app from the terminal?

View 2 Replies View Related

General :: Execute A C Program - Segmentation Fault

Nov 17, 2009

I am using RHEL, and trying to execute a c program.I'm able to compile properly and execute until i reach a function getHandle, where the program gives a segmentation fault. Segmentation fault occurs in getHandle().

Here is the code:

View 3 Replies View Related

General :: Ruby Program Which Use Standard Input?

May 15, 2010

I am using Red Hat Enterprise Version 5. There is a ruby program which use standard input as its input (e.g. the Ruby program process input from standard input). I think standard input should be keyboard, correct?

So, I think other kinds of input (non-standard input) should not work (i.e. the ruby program should not be able to read input from such non-standard input), but actually I have tried using pipe works, I am so confused because I think pipe should be some other kinds of input -- other than standard input, why it could work? i.e. put text "123" in abc.txt with pipe, could achieve the same result as using keyboard as input to type "123" for the ruby program.

cat abc.txt | ~/test/rubysrc/foo.rb

View 4 Replies View Related

OpenSUSE :: Execute Program On Wake / Kill Program On Suspend?

Apr 15, 2011

I have problems to get it work. i have tried to use pm-utils, but it does nothing.

What is need is to kill application, when pc is going into suspend to ram and run that application again on wake. It's a graphical application.

View 1 Replies View Related

General :: Execute A Program Based On A Keypress From A Specific USB Keyboard?

May 4, 2011

I've been given one of these ubiquitous usb-sleep buttons which is basically a supersimple usb-keyboard. It's a big button that sends a SLEEP keypress to the computer when you slam it. But that is pretty boring. I'd love to remap it to do something more fun but I can't figure out how to bind to only the sleep press from the button and not from my ordinary keyboard.

The button identifies as

Bus 001 Device 035: ID 1130:600d Tenx Technology, Inc.

I'd like to know if there's either

a way of mapping a key from a specific keyboard to an action OR a way of remapping the sleep key from a specific keyboard to a new key-code or something like that.

View 1 Replies View Related

General :: Seeking Shortcut To Execute A Program With A Supplied Local Path?

Sep 14, 2011

A program requires local path property to perform correctly.I'm seeking shortcut command to execute a program with a supplied localPath For example, cd /usr/local/blogrmis/usr/local/blogrmis/remote & remote program requires local path @ /usr/local/blogrmis to there any shortcut which i can do it in 1 line?

View 2 Replies View Related

General :: Command To Compile And Execute Fortran Program On System Machine?

Apr 8, 2010

Command to compile n execute a Fortran program on a Linux machine

View 6 Replies View Related

General :: Execute Files Like Other Commands?

Jun 23, 2010

I just want to know that how can I execute a (script) from command-line like other Unix commands. Please write full procedure

View 4 Replies View Related

General :: Execute Wmv Files In Web Browser?

Mar 18, 2011

I am very new to Linux and everything I read says the android OS is based on Linux. That said I am evaluating 2 Android tablets. The Samsung Galaxy and the Motorola Xoom. I am trying to execute wmv files in a web browser, the wmv files download as .wvx rather than play. I have installed flash but the problem continues.

View 1 Replies View Related

General :: Write A Shell Script Which Will Simultaneously Collect OS User Information And Write In An Individual Text Files?

Feb 17, 2010

I want to write a shell script which will simultaneously collect OS user information and write in an individual text files.Can anyone tell me the syntax of the script.N.B. The user name will be mentioned in an array within the shell script.

View 8 Replies View Related

General :: Execute .jar Files In Ubuntu Server?

May 19, 2011

I have a .jar file named "server.jar". In windows it executes on simply double click on it but I want to execute it on the server and I don't know how to do it??? I have Filezilla to upload any file on server and putty for cmd prompt. where i have to upload my file on server and hoto execute it.

View 3 Replies View Related

Software :: Logging To Two Log Files Simultaneously?

Oct 28, 2010

I'm looking for a way to use klogd and/or syslogd to log all the default message levels to the standard /var/log/messages. I also want all kernel (and possibly user) error messages to also be logged to a second file. Is this even possible?

View 3 Replies View Related

General :: Owner Could Not Execute Files Until Mounted In Fstab?

Nov 17, 2009

I'm trying to understand the last few hours... I installed slackware 13 yesterday in a multiboot system. On a seperate hdd from all the OS's I have my mp3 collection......I could play the mp3's as root after manually mounting sdb, but as a user I was unable to play them even though I chown'ed and chmod'ed 777 until I mounted sdb in fstab. The second drive was formatted ntfs by vista.

View 3 Replies View Related

General :: Write A Shell Script That Allows Only User 1 And User 2 To Execute A Program?

Feb 25, 2010

I've looked everywhere but I can't find where to change the default box for incoming mail, or am I on the wrong track. It's a nuisance having to change folders and I can't configure wastebin to empty on exit.And I can't get kmail to import from evolution. Do I have to go to the evolution storage and do it manually, and if so, how do I do that?

View 1 Replies View Related

General :: Deleting Files On USB - Input / Output Error

May 4, 2009

[root@localhost media]# ls UMESH
[root@localhost media]# cd UMESH/
[root@localhost UMESH]# ll
ls: cannot access ejb: Input/output error
total 0 d? ejb
[root@localhost UMESH]# rm -rf ejb
rm: cannot remove 'ejb': Input/output error
[root@localhost UMESH]# ll
ls: cannot access ejb: Input/output error
total 0 d? ejb
[root@localhost UMESH]#

The privileges for root for UMESH are as below:
[root@localhost media]# ll
total 4
drwxr-xr-x 3 vickey root 4096 1970-01-01 05:30 UMESH
[root@localhost media]#

Also I can't even paste a file in the USB.

View 7 Replies View Related

Ubuntu Installation :: Aptitude Downloading Files Simultaneously?

Apr 24, 2011

Ubuntu Lucid 32-bit desktop machine. I run "aptitude update" and "aptitude safe-upgrade" manually from the command-line regularly to upgrade my machine. I usually don't pay that much attention to the downloading, but I noticed yesterday that aptitude appeared to be downloading four files simultaneously, rather than the one at a time that I've always seen. Would this be correct? How can I change that? I can't say I've ever noticed it before.

View 3 Replies View Related

Ubuntu :: Can't Search Files And Folders Simultaneously In Unity?

May 18, 2011

When using the "Files & Folders" search from the Unity launcher I can set what to search for. There are several options like "All files", "Folders" etc. I would prefer to be able to search files /and/ folders at the same time (The unity label is after all "Files & Folders, not Files or Folders). Is there a way I can get it to work like that which to me would be much more efficient?

View 9 Replies View Related

General :: Execute My Scripts ( Files Like Other Normal Commands From Command-line?

Jun 23, 2010

I just want to know that how can I execute my scripts ( files like other normal commands from command-line. Please describe the full method

View 5 Replies View Related

General :: Shell Scripting: Getting Multiple Input Files For An Application?

Sep 21, 2010

I am running an application called QuantiSNP [URL]. The binary file is "quantisnp2", called upon in the "" supplied by the authors. I am only able to run the application for single file processing (e.g. 1 input file for 1 sample; I can't run the batch file processing because I don't have the necessary BeadStudio report files, which has different formatting for the input files).

The difficulty is that I have 300 samples (300 unique sample IDs) and 3 input files for each sample for a total of 900 runs of this application. I am wondering how would I be able to automate this process as a shell script instead of basically manually changing the sample ID and respective input files every time a run completes? I bolded the single file processing shell script command line options below that need to be changed for each sample/input single file processing run. The command line option "--sampleid" is for the name given to the processed output files corresponding to the sample of interest and there are 3 input files for each sample.

/home2/jason/QuantiSNP/quantisnp/linux64/ /home2/jason/QuantiSNP/MCR/v79/ --config /home2/jason/QuantiSNP/quantisnp/config/params.dat --levels /home2/jason/QuantiSNP/quantisnp/config/levels-affy.dat --outdir /home2/jason/QuantiSNP/quantisnp_out/ --sampleid sample1 --gender female --input-files /home2/jason/files/sample1_input.txt

Note that each sample has 3 input files, for a total of 3 runs of "quantisnp2" for each sample. e.g.

sample1 /home2/jason/files/sample1_input.txt
sample1 /home2/jason/files/sample1_input2.txt
sample1 /home2/jason/files/sample1_input3.txt


View 7 Replies View Related

Copyrights 2005-15, All rights reserved